Class: Subject (Subject)

This entity is the subject about which data or references are recorded. This includes the idea of a human participant in a study, a cell line, an animal model, or any other similar entity.

URI: includedcc:Subject

 classDiagram
    class Subject
    click Subject href "../Subject/"
      Record <|-- Subject
        click Record href "../Record/"

      Subject : access_policy_id





        Subject --> "0..1" AccessPolicy : access_policy_id
        click AccessPolicy href "../AccessPolicy/"



      Subject : external_id

      Subject : organism_type

      Subject : study_id





        Subject --> "0..1" Study : study_id
        click Study href "../Study/"



      Subject : subject_id

      Subject : subject_type





        Subject --> "1" Concept : subject_type
        click Concept href "../Concept/"

Inheritance

Subject [ Record]

Slots

Name	Cardinality and Range	Description	Inheritance
subject_id	1 PtGlobalID	INCLUDE Global ID for the Subject	direct
subject_type	1 Concept or EnumSubjectType or EnumUnknownOther	Type of entity this record represents	direct
organism_type	0..1 Uriorcurie or EnumOrganism	Organism Type, typically from NCBITaxon	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record
access_policy_id	0..1 AccessPolicy	Global identifier for the access policy that applies to this row of data	Record
study_id	0..1 Study	INCLUDE Global ID for the study	Record

Usages

used by	used in	type	used
IncludeParticipant	subject_id	range	Subject
Demographics	subject_id	range	Subject
FamilyRelationship	family_member_id	range	Subject
FamilyRelationship	subject_id	range	Subject
FamilyMembership	subject_id	range	Subject
SubjectAssertion	subject_id	range	Subject
Encounter	subject_id	range	Subject
File	subject_id	range	Subject
Assay	subject_id	range	Subject

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type	Mapped Value
self	includedcc:Subject
native	includedcc:Subject

LinkML Source

Direct

name: Subject
description: This entity is the subject about which data or references are recorded.
  This includes the idea of a human participant in a study, a cell line, an animal
  model, or any other similar entity.
title: Subject
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slots:
- subject_id
- subject_type
- organism_type
slot_usage:
  subject_id:
    name: subject_id
    identifier: true
    range: ptGlobalID
    required: true

Induced

name: Subject
description: This entity is the subject about which data or references are recorded.
  This includes the idea of a human participant in a study, a cell line, an animal
  model, or any other similar entity.
title: Subject
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slot_usage:
  subject_id:
    name: subject_id
    identifier: true
    range: ptGlobalID
    required: true
attributes:
  subject_id:
    name: subject_id
    description: INCLUDE Global ID for the Subject
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    owner: Subject
    domain_of:
    - Subject
    - Demographics
    - FamilyRelationship
    - FamilyMembership
    - SubjectAssertion
    - Encounter
    - File
    - Assay
    range: ptGlobalID
    required: true
    multivalued: false
  subject_type:
    name: subject_type
    description: Type of entity this record represents
    title: Subject Type
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Subject
    domain_of:
    - Subject
    range: Concept
    required: true
    any_of:
    - range: EnumSubjectType
    - range: EnumUnknownOther
  organism_type:
    name: organism_type
    description: Organism Type, typically from NCBITaxon.
    title: Organism Type
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Subject
    domain_of:
    - Subject
    range: uriorcurie
    any_of:
    - range: uriorcurie
    - range: EnumOrganism
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Subject
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Subject
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Subject
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false