Class: Subject Assertion (SubjectAssertion)

Assertion about a particular Subject. May include Conditions, Measurements, etc.

 classDiagram
    class SubjectAssertion
    click SubjectAssertion href "../SubjectAssertion/"
      Record <|-- SubjectAssertion
        click Record href "../Record/"

      SubjectAssertion : access_policy_id





        SubjectAssertion --> "0..1" AccessPolicy : access_policy_id
        click AccessPolicy href "../AccessPolicy/"



      SubjectAssertion : age_at_assertion

      SubjectAssertion : age_at_event

      SubjectAssertion : age_at_resolution

      SubjectAssertion : asserter_type





        SubjectAssertion --> "0..1" EnumAsserterType : asserter_type
        click EnumAsserterType href "../EnumAsserterType/"



      SubjectAssertion : assertion_id

      SubjectAssertion : assertion_source_type





        SubjectAssertion --> "0..1" EnumDataSourceType : assertion_source_type
        click EnumDataSourceType href "../EnumDataSourceType/"



      SubjectAssertion : concept





        SubjectAssertion --> "*" Concept : concept
        click Concept href "../Concept/"



      SubjectAssertion : concept_source

      SubjectAssertion : encounter_id





        SubjectAssertion --> "0..1" Encounter : encounter_id
        click Encounter href "../Encounter/"



      SubjectAssertion : external_id

      SubjectAssertion : study_id





        SubjectAssertion --> "0..1" Study : study_id
        click Study href "../Study/"



      SubjectAssertion : subject_id





        SubjectAssertion --> "0..1" Subject : subject_id
        click Subject href "../Subject/"



      SubjectAssertion : value_concept





        SubjectAssertion --> "*" Concept : value_concept
        click Concept href "../Concept/"



      SubjectAssertion : value_number

      SubjectAssertion : value_source

      SubjectAssertion : value_unit





        SubjectAssertion --> "0..1" Concept : value_unit
        click Concept href "../Concept/"



      SubjectAssertion : value_unit_source

Inheritance

SubjectAssertion [ Record]

Slots

Name	Cardinality and Range	Description	Inheritance
assertion_id	1 String or ObGlobalID or DeGlobalID or MsGlobalID	INCLUDE Global ID for the Assertion	direct
subject_id	0..1 Subject	INCLUDE Global ID for the Subject	direct
encounter_id	0..1 Encounter	Unique identifier for this Encounter	direct
asserter_type	0..1 EnumAsserterType	The original asserter of this information	direct
assertion_source_type	0..1 EnumDataSourceType	The source of this assertion from the original data	direct
age_at_assertion	0..1 Integer	The age in days of the Subject when the assertion was made	direct
age_at_event	0..1 Integer	The age in days of the Subject at the time point which the assertion describe...	direct
age_at_resolution	0..1 Integer	The age in days of the Subject when the asserted state was resolved	direct
concept	* Concept	The structured term defining the meaning of the assertion	direct
concept_source	0..1 String	The source text yielding the standardized concept	direct
value_concept	* Concept or EnumPresentAbsent	The structured term defining the value of the assertion	direct
value_number	0..1 Float	The numeric value of the assertion	direct
value_source	0..1 String	The source text yielding the value	direct
value_unit	0..1 Concept	The structured term defining the units of the value	direct
value_unit_source	0..1 String	The source text yielding the value's units	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record
access_policy_id	0..1 AccessPolicy	Global identifier for the access policy that applies to this row of data	Record
study_id	0..1 Study	INCLUDE Global ID for the study	Record

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type	Mapped Value
self	includedcc:SubjectAssertion
native	includedcc:SubjectAssertion

LinkML Source

Direct

name: SubjectAssertion
description: Assertion about a particular Subject. May include Conditions, Measurements,
  etc.
title: Subject Assertion
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slots:
- assertion_id
- subject_id
- encounter_id
- asserter_type
- assertion_source_type
- age_at_assertion
- age_at_event
- age_at_resolution
- concept
- concept_source
- value_concept
- value_number
- value_source
- value_unit
- value_unit_source
slot_usage:
  assertion_id:
    name: assertion_id
    identifier: true
    range: string
    required: true
    any_of:
    - range: obGlobalID
    - range: deGlobalID
    - range: msGlobalID

Induced

name: SubjectAssertion
description: Assertion about a particular Subject. May include Conditions, Measurements,
  etc.
title: Subject Assertion
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slot_usage:
  assertion_id:
    name: assertion_id
    identifier: true
    range: string
    required: true
    any_of:
    - range: obGlobalID
    - range: deGlobalID
    - range: msGlobalID
attributes:
  assertion_id:
    name: assertion_id
    description: INCLUDE Global ID for the Assertion
    title: Assertion ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
    required: true
    multivalued: false
    any_of:
    - range: obGlobalID
    - range: deGlobalID
    - range: msGlobalID
  subject_id:
    name: subject_id
    description: INCLUDE Global ID for the Subject
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - Subject
    - Demographics
    - FamilyRelationship
    - FamilyMembership
    - SubjectAssertion
    - Encounter
    - File
    - Assay
    range: Subject
    multivalued: false
  encounter_id:
    name: encounter_id
    description: Unique identifier for this Encounter.
    title: Encounter ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    - BiospecimenCollection
    - Encounter
    range: Encounter
  asserter_type:
    name: asserter_type
    description: The original asserter of this information
    title: Asserter Type
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: EnumAsserterType
  assertion_source_type:
    name: assertion_source_type
    description: The source of this assertion from the original data
    title: Assertion Source
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: EnumDataSourceType
  age_at_assertion:
    name: age_at_assertion
    description: The age in days of the Subject when the assertion was made.
    title: Age at assertion
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: integer
    unit:
      ucum_code: d
  age_at_event:
    name: age_at_event
    description: The age in days of the Subject at the time point which the assertion
      describes, eg, age of onset or when a measurement was performed.
    title: Age at event
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    - Encounter
    range: integer
    unit:
      ucum_code: d
  age_at_resolution:
    name: age_at_resolution
    description: The age in days of the Subject when the asserted state was resolved.
    title: Age at resolution
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: integer
    unit:
      ucum_code: d
  concept:
    name: concept
    description: The structured term defining the meaning of the assertion.
    title: Concept
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
    multivalued: true
  concept_source:
    name: concept_source
    description: The source text yielding the standardized concept.
    title: Concept Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  value_concept:
    name: value_concept
    description: The structured term defining the value of the assertion.
    title: Value concept
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
    multivalued: true
    any_of:
    - range: Concept
    - range: EnumPresentAbsent
  value_number:
    name: value_number
    description: The numeric value of the assertion.
    title: Value Number
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: float
  value_source:
    name: value_source
    description: The source text yielding the value.
    title: Value Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  value_unit:
    name: value_unit
    description: The structured term defining the units of the value.
    title: Value Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
  value_unit_source:
    name: value_unit_source
    description: The source text yielding the value's units.
    title: Value Units Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: SubjectAssertion
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false