Class: Virtual BioRepository (VBR) (VirtualBiorepository)

An organization that can provide access to specimen for further analysis.

classDiagram class VirtualBiorepository click VirtualBiorepository href "../VirtualBiorepository/" Record <|-- VirtualBiorepository click Record href "../Record/" VirtualBiorepository : access_policy_id VirtualBiorepository --> "0..1" AccessPolicy : access_policy_id click AccessPolicy href "../AccessPolicy/" VirtualBiorepository : contact VirtualBiorepository --> "1..*" Investigator : contact click Investigator href "../Investigator/" VirtualBiorepository : external_id VirtualBiorepository : institution VirtualBiorepository : name VirtualBiorepository : study_id VirtualBiorepository --> "0..1" Study : study_id click Study href "../Study/" VirtualBiorepository : vbr_id VirtualBiorepository : vbr_readme VirtualBiorepository : website

Inheritance

Record
- VirtualBiorepository

Slots

Name	Cardinality and Range	Description	Inheritance
vbr_id	1 String	Information about the study's Virtual Biorepository, if participating	direct
name	0..1 String	Name of the entity	direct
institution	0..1 String	Name of the institution this record is associated with	direct
contact	1..* Investigator	The individual to contact with questions about this record	direct
website	0..1 Uri	Website with more information about this entity	direct
vbr_readme	0..1 String	Instructions for contacting or requesting samples from Virtual Biorepository,...	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record
access_policy_id	0..1 AccessPolicy	Global identifier for the access policy that applies to this row of data	Record
study_id	0..1 Study	INCLUDE Global ID for the study	Record

Usages

used by	used in	type	used
StudyMetadata	vbr_id	range	VirtualBiorepository

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type	Mapped Value
self	includedcc:VirtualBiorepository
native	includedcc:VirtualBiorepository

LinkML Source

Direct

name: VirtualBiorepository
description: An organization that can provide access to specimen for further analysis.
title: Virtual BioRepository (VBR)
from_schema: https://includedcc.org/include-access-model
is_a: Record
slots:
- vbr_id
- name
- institution
- contact
- website
- vbr_readme
slot_usage:
  vbr_id:
    name: vbr_id
    identifier: true
    range: string
    required: true

Induced

name: VirtualBiorepository
description: An organization that can provide access to specimen for further analysis.
title: Virtual BioRepository (VBR)
from_schema: https://includedcc.org/include-access-model
is_a: Record
slot_usage:
  vbr_id:
    name: vbr_id
    identifier: true
    range: string
    required: true
attributes:
  vbr_id:
    name: vbr_id
    description: Information about the study's Virtual Biorepository, if participating
    title: Virtual Biorepository
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    alias: vbr_id
    owner: VirtualBiorepository
    domain_of:
    - StudyMetadata
    - VirtualBiorepository
    range: string
    required: true
  name:
    name: name
    description: Name of the entity.
    title: Name
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: name
    owner: VirtualBiorepository
    domain_of:
    - VirtualBiorepository
    - Investigator
    - EncounterDefinition
    - ActivityDefinition
    - Dataset
    range: string
    required: false
  institution:
    name: institution
    description: Name of the institution this record is associated with.
    title: Institution
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: institution
    owner: VirtualBiorepository
    domain_of:
    - VirtualBiorepository
    - Investigator
    range: string
    required: false
  contact:
    name: contact
    description: The individual to contact with questions about this record.
    title: Contact Person
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: contact
    owner: VirtualBiorepository
    domain_of:
    - Study
    - VirtualBiorepository
    range: Investigator
    required: true
    multivalued: true
  website:
    name: website
    description: Website with more information about this entity.
    title: Website
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: website
    owner: VirtualBiorepository
    domain_of:
    - AccessPolicy
    - Study
    - VirtualBiorepository
    - Publication
    range: uri
  vbr_readme:
    name: vbr_readme
    description: Instructions for contacting or requesting samples from Virtual Biorepository,
      if participating
    title: VBR Readme
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: vbr_readme
    owner: VirtualBiorepository
    domain_of:
    - VirtualBiorepository
    range: string
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: external_id
    owner: VirtualBiorepository
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: access_policy_id
    owner: VirtualBiorepository
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: study_id
    owner: VirtualBiorepository
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false