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Class: Concept (Concept)

A standardized concept with display information.

URI: cam:Concept

 classDiagram
    class Concept
    click Concept href "../Concept/"
      Concept : concept_code

      Concept : concept_curie

      Concept : concept_id

      Concept : definition

      Concept : display

      Concept : vocabulary_prefix





        Concept --> "0..1" Vocabulary : vocabulary_prefix
        click Vocabulary href "../Vocabulary/"

Slots

Name Cardinality and Range Description Inheritance
concept_curie 1
Uriorcurie		 The standardized curie for the term direct
concept_id 0..1
Integer		 The OMOP Concept ID for the term, if applicable direct
vocabulary_prefix 0..1
Vocabulary		 The authoritative namespace prefix allocated to the vocabulary direct
concept_code 1
String		 Identifier as it is defined within the ontology direct
display 0..1
String		 The friendly display string of the coded term direct
definition 0..1
String		 Detailed definition or description for the term direct

Usages

used by used in type used
StudyMetadata study_design range Concept
StudyMetadata study_design any_of[range] Concept
StudyMetadata data_category range Concept
StudyMetadata data_category any_of[range] Concept
StudyMetadata research_domain range Concept
StudyMetadata research_domain any_of[range] Concept
Subject subject_type range Concept
Demographics sex range Concept
Demographics race range Concept
Demographics ethnicity range Concept
Demographics vital_status range Concept
FamilyRelationship relation range Concept
FamilyMembership family_role range Concept
FamilyMembership family_role any_of[range] Concept
SubjectAssertion concept range Concept
SubjectAssertion value_concept range Concept
SubjectAssertion value_concept any_of[range] Concept
SubjectAssertion value_unit range Concept
ConceptRelationship target_concept_curie range Concept
Sample quantity_unit range Concept
BiospecimenCollection site range Concept
BiospecimenCollection site any_of[range] Concept
BiospecimenCollection spatial_qualifier range Concept
BiospecimenCollection spatial_qualifier any_of[range] Concept
BiospecimenCollection laterality range Concept
BiospecimenCollection laterality any_of[range] Concept
Aliquot quantity_unit range Concept
Aliquot concentration_unit range Concept
File data_category range Concept
File data_category any_of[range] Concept

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self cam:Concept
native cam:Concept

LinkML Source

Direct

name: Concept
description: A standardized concept with display information.
title: Concept
from_schema: https://includedcc.org/common-access-model
slots:
- concept_curie
- concept_id
- vocabulary_prefix
- concept_code
- display
- definition
slot_usage:
  concept_curie:
    name: concept_curie
    identifier: true
    range: uriorcurie
    required: true

Induced

name: Concept
description: A standardized concept with display information.
title: Concept
from_schema: https://includedcc.org/common-access-model
slot_usage:
  concept_curie:
    name: concept_curie
    identifier: true
    range: uriorcurie
    required: true
attributes:
  concept_curie:
    name: concept_curie
    description: The standardized curie for the term.
    title: Concept Curie
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    identifier: true
    owner: Concept
    domain_of:
    - Concept
    - Synonym
    - DeprecatedConcept
    - ConceptRelationship
    range: uriorcurie
    required: true
  concept_id:
    name: concept_id
    description: The OMOP Concept ID for the term, if applicable
    title: OMOP Concept ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Concept
    domain_of:
    - Concept
    range: integer
  vocabulary_prefix:
    name: vocabulary_prefix
    description: The authoritative namespace prefix allocated to the vocabulary. Used
      to resolve compact identifiers (CURIEs) to their full semantic URIs or FHIR
      system URLs.
    title: Canonical Curie Prefix
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Concept
    domain_of:
    - Concept
    - Vocabulary
    range: Vocabulary
  concept_code:
    name: concept_code
    description: Identifier as it is defined within the ontology
    title: Concept Code
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Concept
    domain_of:
    - Concept
    range: string
    required: true
  display:
    name: display
    description: The friendly display string of the coded term.
    title: Display String
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Concept
    domain_of:
    - Concept
    - Synonym
    range: string
  definition:
    name: definition
    description: Detailed definition or description for the term
    title: Definition
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Concept
    domain_of:
    - Concept
    range: string