Class: Study (Study)

General information about the study

classDiagram class Study click Study href "../Study" Thing <|-- Study click Thing href "../Thing" Study : acknowledgments Study : citationStatement Study : clinicalDataSourceType Study --> "1..*" EnumClinicalDataSourceType : clinicalDataSourceType click EnumClinicalDataSourceType href "../EnumClinicalDataSourceType" Study : dataCategory Study --> "1..*" EnumDataCategory : dataCategory click EnumDataCategory href "../EnumDataCategory" Study : dbgap Study : expectedNumberOfParticipants Study : guidMapped Study : guidType Study --> "1" EnumGuidType : guidType click EnumGuidType href "../EnumGuidType" Study : participantLifespanStage Study --> "1..*" EnumParticipantLifespanStage : participantLifespanStage click EnumParticipantLifespanStage href "../EnumParticipantLifespanStage" Study : principalInvestigatorName Study : program Study --> "1..*" EnumProgram : program click EnumProgram href "../EnumProgram" Study : publication Study : researchDomain Study --> "1..*" EnumResearchDomain : researchDomain click EnumResearchDomain href "../EnumResearchDomain" Study : selectionCriteria Study : studyCode Study --> "1" EnumStudyCode : studyCode click EnumStudyCode href "../EnumStudyCode" Study : studyContactEmail Study : studyContactInstitution Study : studyContactName Study : studyDescription Study : studyDesign Study --> "1" EnumStudyDesign : studyDesign click EnumStudyDesign href "../EnumStudyDesign" Study : studyTitle Study : studyWebsite Study : vbrEmail Study : vbrReadme Study : vbrUrl

Inheritance

Thing
- Study

Slots

Name	Cardinality and Range	Description	Inheritance
studyCode	1 EnumStudyCode	Unique identifier for the study (generally a short acronym)	direct
studyTitle	1 String	Full title of the study	direct
program	1..* EnumProgram	Funding source(s) for the study (pipe-separated if multiple)	direct
studyDescription	1 String	Brief description of the study (2-4 sentences)	direct
principalInvestigatorName	1..* String	Name(s) of Principal Investigator(s) of this study; pipe-separated if multipl...	direct
studyContactName	1..* String	Name of contact person for this study; pipe-separated if multiple	direct
studyContactInstitution	1..* String	Institution of contact person for this study; pipe-separated if multiple	direct
studyContactEmail	1..* String	Email address of contact person for this study; pipe-separated if multiple	direct
vbrEmail	0..1 String	Email address for Virtual Biorepository requests/inquiries, if participating	direct
vbrUrl	0..1 Uri	Link to Virtual Biorepository request form, if participating	direct
vbrReadme	0..1 String	Instructions for contacting or requesting samples from Virtual Biorepository,...	direct
researchDomain	1..* EnumResearchDomain	Main research domain(s) of the study, other than Down syndrome; pipe-separate...	direct
participantLifespanStage	1..* EnumParticipantLifespanStage	Focus age group(s) of the study population; pipe-separated if multiple	direct
selectionCriteria	0..1 String	Brief description of inclusion and/or exclusion criteria for the study	direct
studyDesign	1 EnumStudyDesign	Overall design of study, including whether it is longitudinal and whether fam...	direct
clinicalDataSourceType	1..* EnumClinicalDataSourceType	Source(s) of data collected from study participants; pipe-separated if multip...	direct
dataCategory	1..* EnumDataCategory	Categories of data expected to be collected in this study	direct
studyWebsite	0..1 Uri	Website for the study	direct
dbgap	* String	dbGaP "phs" accession code(s) associated with this Study, either for access o...	direct
publication	* Uri	URL for publication(s) describing the study's rationale and methodology (PubM...	direct
expectedNumberOfParticipants	1 Integer	Expected number of participants in this study (or actual number, if data has ...	direct
guidType	1 EnumGuidType	System used to generate globally unique identifiers (GUIDs)	direct
guidMapped	0..1 Boolean	For studies using NDAR GUIDs, have the GUIDs been added to the INCLUDE GUID M...	direct
acknowledgments	* String	Funding statement and acknowledgments for this study	direct
citationStatement	* String	Statement that secondary data users should use to acknowledge use of this dat...	direct

Identifier and Mapping Information

Annotations

property	value
required	True

Schema Source

from schema: https://w3id.org/include

Mappings

Mapping Type	Mapped Value
self	include:Study
native	include:Study

LinkML Source

Direct

name: Study
definition_uri: include:Study
annotations:
  required:
    tag: required
    value: 'True'
description: General information about the study
title: Study
from_schema: https://w3id.org/include
is_a: Thing
slots:
- studyCode
- studyTitle
- program
- studyDescription
- principalInvestigatorName
- studyContactName
- studyContactInstitution
- studyContactEmail
- vbrEmail
- vbrUrl
- vbrReadme
- researchDomain
- participantLifespanStage
- selectionCriteria
- studyDesign
- clinicalDataSourceType
- dataCategory
- studyWebsite
- dbgap
- publication
- expectedNumberOfParticipants
- guidType
- guidMapped
- acknowledgments
- citationStatement
slot_usage:
  dataCategory:
    name: dataCategory
    description: Categories of data expected to be collected in this study
    multivalued: true
  dbgap:
    name: dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
  publication:
    name: publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    description: Expected number of participants in this study (or actual number,
      if data has been submitted to INCLUDE DCC). If additional explanation is needed,
      please add to Study Description field.

Induced

name: Study
definition_uri: include:Study
annotations:
  required:
    tag: required
    value: 'True'
description: General information about the study
title: Study
from_schema: https://w3id.org/include
is_a: Thing
slot_usage:
  dataCategory:
    name: dataCategory
    description: Categories of data expected to be collected in this study
    multivalued: true
  dbgap:
    name: dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
  publication:
    name: publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    description: Expected number of participants in this study (or actual number,
      if data has been submitted to INCLUDE DCC). If additional explanation is needed,
      please add to Study Description field.
attributes:
  studyCode:
    name: studyCode
    definition_uri: include:studyCode
    description: Unique identifier for the study (generally a short acronym)
    title: Study Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyCode
    owner: Study
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    - Study
    - Dataset
    - DatasetManifest
    range: enum_studyCode
    required: true
  studyTitle:
    name: studyTitle
    definition_uri: include:studyTitle
    description: Full title of the study
    title: Study Title
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyTitle
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  program:
    name: program
    definition_uri: include:program
    description: Funding source(s) for the study (pipe-separated if multiple)
    title: Program
    from_schema: https://w3id.org/include
    rank: 1000
    alias: program
    owner: Study
    domain_of:
    - Study
    range: enum_program
    required: true
    multivalued: true
  studyDescription:
    name: studyDescription
    definition_uri: include:studyDescription
    description: Brief description of the study (2-4 sentences)
    title: Study Description
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyDescription
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  principalInvestigatorName:
    name: principalInvestigatorName
    definition_uri: include:principalInvestigatorName
    description: Name(s) of Principal Investigator(s) of this study; pipe-separated
      if multiple
    title: Principal Investigator Name
    from_schema: https://w3id.org/include
    rank: 1000
    alias: principalInvestigatorName
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
    multivalued: true
  studyContactName:
    name: studyContactName
    definition_uri: include:studyContactName
    description: Name of contact person for this study; pipe-separated if multiple
    title: Study Contact Name
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyContactName
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
    multivalued: true
  studyContactInstitution:
    name: studyContactInstitution
    definition_uri: include:studyContactInstitution
    description: Institution of contact person for this study; pipe-separated if multiple
    title: Study Contact Institution
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyContactInstitution
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
    multivalued: true
  studyContactEmail:
    name: studyContactEmail
    definition_uri: include:studyContactEmail
    description: Email address of contact person for this study; pipe-separated if
      multiple
    title: Study Contact Email
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyContactEmail
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
    multivalued: true
  vbrEmail:
    name: vbrEmail
    definition_uri: include:vbrEmail
    description: Email address for Virtual Biorepository requests/inquiries, if participating
    title: VBR Email
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrEmail
    owner: Study
    domain_of:
    - Study
    range: string
  vbrUrl:
    name: vbrUrl
    definition_uri: include:vbrUrl
    description: Link to Virtual Biorepository request form, if participating
    title: VBR URL
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrUrl
    owner: Study
    domain_of:
    - Study
    range: uri
  vbrReadme:
    name: vbrReadme
    definition_uri: include:vbrReadme
    description: Instructions for contacting or requesting samples from Virtual Biorepository,
      if participating
    title: VBR Readme
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrReadme
    owner: Study
    domain_of:
    - Study
    range: string
  researchDomain:
    name: researchDomain
    definition_uri: include:researchDomain
    description: Main research domain(s) of the study, other than Down syndrome; pipe-separated
      if multiple
    title: Research Domain
    from_schema: https://w3id.org/include
    rank: 1000
    alias: researchDomain
    owner: Study
    domain_of:
    - Study
    range: enum_researchDomain
    required: true
    multivalued: true
  participantLifespanStage:
    name: participantLifespanStage
    definition_uri: include:participantLifespanStage
    description: Focus age group(s) of the study population; pipe-separated if multiple
    title: Participant Lifespan Stage
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantLifespanStage
    owner: Study
    domain_of:
    - Study
    range: enum_participantLifespanStage
    required: true
    multivalued: true
  selectionCriteria:
    name: selectionCriteria
    definition_uri: include:selectionCriteria
    description: Brief description of inclusion and/or exclusion criteria for the
      study
    title: Selection Criteria
    from_schema: https://w3id.org/include
    rank: 1000
    alias: selectionCriteria
    owner: Study
    domain_of:
    - Study
    range: string
  studyDesign:
    name: studyDesign
    definition_uri: include:studyDesign
    description: Overall design of study, including whether it is longitudinal and
      whether family members/unrelated controls are also enrolled
    title: Study Design
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyDesign
    owner: Study
    domain_of:
    - Study
    range: enum_studyDesign
    required: true
  clinicalDataSourceType:
    name: clinicalDataSourceType
    definition_uri: include:clinicalDataSourceType
    description: Source(s) of data collected from study participants; pipe-separated
      if multiple
    title: Clinical Data Source Type
    from_schema: https://w3id.org/include
    rank: 1000
    alias: clinicalDataSourceType
    owner: Study
    domain_of:
    - Study
    range: enum_clinicalDataSourceType
    required: true
    multivalued: true
  dataCategory:
    name: dataCategory
    definition_uri: include:dataCategory
    description: Categories of data expected to be collected in this study
    title: Data Category
    from_schema: https://w3id.org/include
    rank: 1000
    alias: dataCategory
    owner: Study
    domain_of:
    - DataFile
    - Study
    - Dataset
    range: enum_dataCategory
    required: true
    multivalued: true
  studyWebsite:
    name: studyWebsite
    definition_uri: include:studyWebsite
    description: Website for the study
    title: Study Website
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyWebsite
    owner: Study
    domain_of:
    - Study
    range: uri
  dbgap:
    name: dbgap
    definition_uri: include:dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
    title: dbGaP
    from_schema: https://w3id.org/include
    rank: 1000
    alias: dbgap
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: string
    multivalued: true
  publication:
    name: publication
    definition_uri: include:publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
    title: Publication
    from_schema: https://w3id.org/include
    rank: 1000
    alias: publication
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: uri
    multivalued: true
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    definition_uri: include:expectedNumberOfParticipants
    description: Expected number of participants in this study (or actual number,
      if data has been submitted to INCLUDE DCC). If additional explanation is needed,
      please add to Study Description field.
    title: Expected Number of Participants
    from_schema: https://w3id.org/include
    rank: 1000
    alias: expectedNumberOfParticipants
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: integer
    required: true
  guidType:
    name: guidType
    definition_uri: include:guidType
    description: System used to generate globally unique identifiers (GUIDs)
    title: GUID Type
    from_schema: https://w3id.org/include
    rank: 1000
    alias: guidType
    owner: Study
    domain_of:
    - Study
    range: enum_guidType
    required: true
  guidMapped:
    name: guidMapped
    definition_uri: include:guidMapped
    description: For studies using NDAR GUIDs, have the GUIDs been added to the INCLUDE
      GUID Mapping File?
    title: GUIDs Mapped?
    from_schema: https://w3id.org/include
    rank: 1000
    alias: guidMapped
    owner: Study
    domain_of:
    - Study
    range: boolean
  acknowledgments:
    name: acknowledgments
    definition_uri: include:acknowledgments
    description: Funding statement and acknowledgments for this study
    title: Acknowledgments
    from_schema: https://w3id.org/include
    rank: 1000
    alias: acknowledgments
    owner: Study
    domain_of:
    - Study
    range: string
    multivalued: true
  citationStatement:
    name: citationStatement
    definition_uri: include:citationStatement
    description: Statement that secondary data users should use to acknowledge use
      of this dataset. E.g., "The results analyzed and <published or shown> here are
      based in whole or in part upon data generated by the INCLUDE (INvestigation
      of Co-occurring conditions across the Lifespan to Understand Down syndromE)
      Project <insert accession number(s) and/or study DOI(s)>, and were accessed
      from the INCLUDE Data Hub and <insert other database(s)>."
    title: Citation Statement
    from_schema: https://w3id.org/include
    rank: 1000
    alias: citationStatement
    owner: Study
    domain_of:
    - Study
    range: string
    multivalued: true