Class: Study (Study)

General information about the study

classDiagram class Study click Study href "../Study" Thing <|-- Study click Thing href "../Thing" Study : acknowledgments Study : citationStatement Study : clinicalDataSourceType Study --> "1..*" EnumClinicalDataSourceType : clinicalDataSourceType click EnumClinicalDataSourceType href "../EnumClinicalDataSourceType" Study : dataCategory Study --> "1" EnumDataCategory : dataCategory click EnumDataCategory href "../EnumDataCategory" Study : dbgap Study : expectedNumberOfParticipants Study : guidType Study --> "1" EnumGuidType : guidType click EnumGuidType href "../EnumGuidType" Study : participantLifespanStage Study --> "1..*" EnumParticipantLifespanStage : participantLifespanStage click EnumParticipantLifespanStage href "../EnumParticipantLifespanStage" Study : principalInvestigatorName Study : program Study --> "1..*" EnumProgram : program click EnumProgram href "../EnumProgram" Study : publication Study : researchDomain Study --> "1..*" EnumResearchDomain : researchDomain click EnumResearchDomain href "../EnumResearchDomain" Study : selectionCriteria Study : studyCode Study --> "1" EnumStudyCode : studyCode click EnumStudyCode href "../EnumStudyCode" Study : studyContactEmail Study : studyContactInstitution Study : studyContactName Study : studyDescription Study : studyDesign Study : studyTitle Study : studyWebsite Study : vbrEmail Study : vbrReadme Study : vbrUrl

Inheritance

Thing
- Study

Slots

Name	Cardinality and Range	Description	Inheritance
studyCode	1 EnumStudyCode	Unique identifer for the study (generally a short acronym)	direct
studyTitle	1 String	Full title of the study	direct
program	1..* EnumProgram	Funding source(s) for the study (pipe-separated if multiple)	direct
studyDescription	1 String	Brief description of the study (2-4 sentences)	direct
principalInvestigatorName	1..* String	Name(s) of Principal Investigator(s) of this study; pipe-separated if multipl...	direct
studyContactName	1..* String	Name of contact person for this study; pipe-separated if multiple	direct
studyContactInstitution	1..* String	Institution of contact person for this study; pipe-separated if multiple	direct
studyContactEmail	1..* String	Email address of contact person for this study; pipe-separated if multiple	direct
vbrEmail	0..1 String	Email address for Virtual Biorepository requests/inquiries	direct
vbrUrl	0..1 Uri	Link to Virtual Biorepository request form	direct
vbrReadme	0..1 String	Instructions for contacting or requesting samples from Virtual Biorepository	direct
researchDomain	1..* EnumResearchDomain	Main research domain(s) of the study, other than Down syndrome; pipe-separate...	direct
participantLifespanStage	1..* EnumParticipantLifespanStage	Focus age group(s) of the study population; pipe-separated if multiple	direct
selectionCriteria	0..1 String	Brief description of inclusion and/or exclusion criteria for the study	direct
studyDesign	1 String	Overall design of study, including whether it is longitudinal and whether fam...	direct
clinicalDataSourceType	1..* EnumClinicalDataSourceType	Source(s) of data collected from study participants; pipe-separated if multip...	direct
dataCategory	1 EnumDataCategory	Categories of data expected to be collected in this study	direct
studyWebsite	0..1 Uri	Website for the study	direct
dbgap	* String	dbGaP "phs" accession code(s) associated with this Study, either for access o...	direct
publication	* Uri	URL for publication(s) describing the study's rationale and methodology (PubM...	direct
expectedNumberOfParticipants	1 Integer	Expected number of participants in this study	direct
guidType	1 EnumGuidType	System used to generate globally unique identifiers (GUIDs)	direct
acknowledgments	* String	Funding statement and acknowledgments for this study	direct
citationStatement	* String	Statement that secondary data users should use to acknowledge use of this dat...	direct

Identifier and Mapping Information

Annotations

property	value
required	True

Schema Source

from schema: https://w3id.org/include

Mappings

Mapping Type	Mapped Value
self	include:Study
native	include:Study

LinkML Source

Direct

name: Study
definition_uri: include:Study
annotations:
  required:
    tag: required
    value: 'True'
description: General information about the study
title: Study
from_schema: https://w3id.org/include
is_a: Thing
slots:
- studyCode
- studyTitle
- program
- studyDescription
- principalInvestigatorName
- studyContactName
- studyContactInstitution
- studyContactEmail
- vbrEmail
- vbrUrl
- vbrReadme
- researchDomain
- participantLifespanStage
- selectionCriteria
- studyDesign
- clinicalDataSourceType
- dataCategory
- studyWebsite
- dbgap
- publication
- expectedNumberOfParticipants
- guidType
- acknowledgments
- citationStatement
slot_usage:
  dataCategory:
    name: dataCategory
    description: Categories of data expected to be collected in this study
    domain_of:
    - DataFile
    - Study
    - Dataset
  dbgap:
    name: dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
    domain_of:
    - Study
    - Dataset
  publication:
    name: publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
    domain_of:
    - Study
    - Dataset
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    description: Expected number of participants in this study. If additional explanation
      is needed, please add to Study Description field.
    domain_of:
    - Study
    - Dataset

Induced

name: Study
definition_uri: include:Study
annotations:
  required:
    tag: required
    value: 'True'
description: General information about the study
title: Study
from_schema: https://w3id.org/include
is_a: Thing
slot_usage:
  dataCategory:
    name: dataCategory
    description: Categories of data expected to be collected in this study
    domain_of:
    - DataFile
    - Study
    - Dataset
  dbgap:
    name: dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
    domain_of:
    - Study
    - Dataset
  publication:
    name: publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
    domain_of:
    - Study
    - Dataset
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    description: Expected number of participants in this study. If additional explanation
      is needed, please add to Study Description field.
    domain_of:
    - Study
    - Dataset
attributes:
  studyCode:
    name: studyCode
    definition_uri: include:studyCode
    description: Unique identifer for the study (generally a short acronym)
    title: Study Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyCode
    owner: Study
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    - Study
    - Dataset
    - DatasetManifest
    range: enum_studyCode
    required: true
  studyTitle:
    name: studyTitle
    definition_uri: include:studyTitle
    description: Full title of the study
    title: Study Title
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyTitle
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  program:
    name: program
    definition_uri: include:program
    description: Funding source(s) for the study (pipe-separated if multiple)
    title: Program
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: program
    owner: Study
    domain_of:
    - Study
    range: enum_program
    required: true
  studyDescription:
    name: studyDescription
    definition_uri: include:studyDescription
    description: Brief description of the study (2-4 sentences)
    title: Study Description
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyDescription
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  principalInvestigatorName:
    name: principalInvestigatorName
    definition_uri: include:principalInvestigatorName
    description: Name(s) of Principal Investigator(s) of this study; pipe-separated
      if multiple
    title: Principal Investigator Name
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: principalInvestigatorName
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  studyContactName:
    name: studyContactName
    definition_uri: include:studyContactName
    description: Name of contact person for this study; pipe-separated if multiple
    title: Study Contact Name
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: studyContactName
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  studyContactInstitution:
    name: studyContactInstitution
    definition_uri: include:studyContactInstitution
    description: Institution of contact person for this study; pipe-separated if multiple
    title: Study Contact Institution
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: studyContactInstitution
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  studyContactEmail:
    name: studyContactEmail
    definition_uri: include:studyContactEmail
    description: Email address of contact person for this study; pipe-separated if
      multiple
    title: Study Contact Email
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: studyContactEmail
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  vbrEmail:
    name: vbrEmail
    definition_uri: include:vbrEmail
    description: Email address for Virtual Biorepository requests/inquiries
    title: VBR Email
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrEmail
    owner: Study
    domain_of:
    - Study
    range: string
  vbrUrl:
    name: vbrUrl
    definition_uri: include:vbrUrl
    description: Link to Virtual Biorepository request form
    title: VBR URL
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrUrl
    owner: Study
    domain_of:
    - Study
    range: uri
  vbrReadme:
    name: vbrReadme
    definition_uri: include:vbrReadme
    description: Instructions for contacting or requesting samples from Virtual Biorepository
    title: VBR Readme
    from_schema: https://w3id.org/include
    rank: 1000
    alias: vbrReadme
    owner: Study
    domain_of:
    - Study
    range: string
  researchDomain:
    name: researchDomain
    definition_uri: include:researchDomain
    description: Main research domain(s) of the study, other than Down syndrome; pipe-separated
      if multiple
    title: Research Domain
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: researchDomain
    owner: Study
    domain_of:
    - Study
    range: enum_researchDomain
    required: true
  participantLifespanStage:
    name: participantLifespanStage
    definition_uri: include:participantLifespanStage
    description: Focus age group(s) of the study population; pipe-separated if multiple
    title: Participant Lifespan Stage
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: participantLifespanStage
    owner: Study
    domain_of:
    - Study
    range: enum_participantLifespanStage
    required: true
  selectionCriteria:
    name: selectionCriteria
    definition_uri: include:selectionCriteria
    description: Brief description of inclusion and/or exclusion criteria for the
      study
    title: Selection Criteria
    from_schema: https://w3id.org/include
    rank: 1000
    alias: selectionCriteria
    owner: Study
    domain_of:
    - Study
    range: string
  studyDesign:
    name: studyDesign
    definition_uri: include:studyDesign
    description: Overall design of study, including whether it is longitudinal and
      whether family members/unrelated controls are also enrolled
    title: Study Design
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyDesign
    owner: Study
    domain_of:
    - Study
    range: string
    required: true
  clinicalDataSourceType:
    name: clinicalDataSourceType
    definition_uri: include:clinicalDataSourceType
    description: Source(s) of data collected from study participants; pipe-separated
      if multiple
    title: Clinical Data Source Type
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: clinicalDataSourceType
    owner: Study
    domain_of:
    - Study
    range: enum_clinicalDataSourceType
    required: true
  dataCategory:
    name: dataCategory
    definition_uri: include:dataCategory
    description: Categories of data expected to be collected in this study
    title: Data Category
    from_schema: https://w3id.org/include
    rank: 1000
    alias: dataCategory
    owner: Study
    domain_of:
    - DataFile
    - Study
    - Dataset
    range: enum_dataCategory
    required: true
  studyWebsite:
    name: studyWebsite
    definition_uri: include:studyWebsite
    description: Website for the study
    title: Study Website
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyWebsite
    owner: Study
    domain_of:
    - Study
    range: uri
  dbgap:
    name: dbgap
    definition_uri: include:dbgap
    description: dbGaP "phs" accession code(s) associated with this Study, either
      for access or informational purposes (pipe-separated if multiple)
    title: dbGaP
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: dbgap
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: string
  publication:
    name: publication
    definition_uri: include:publication
    description: URL for publication(s) describing the study's rationale and methodology
      (PubMed Central preferred but not required; pipe-separated if multiple)
    title: Publication
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: publication
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: uri
  expectedNumberOfParticipants:
    name: expectedNumberOfParticipants
    definition_uri: include:expectedNumberOfParticipants
    description: Expected number of participants in this study. If additional explanation
      is needed, please add to Study Description field.
    title: Expected Number of Participants
    from_schema: https://w3id.org/include
    rank: 1000
    alias: expectedNumberOfParticipants
    owner: Study
    domain_of:
    - Study
    - Dataset
    range: integer
    required: true
  guidType:
    name: guidType
    definition_uri: include:guidType
    description: System used to generate globally unique identifiers (GUIDs)
    title: GUID Type
    from_schema: https://w3id.org/include
    rank: 1000
    alias: guidType
    owner: Study
    domain_of:
    - Study
    range: enum_guidType
    required: true
  acknowledgments:
    name: acknowledgments
    definition_uri: include:acknowledgments
    description: Funding statement and acknowledgments for this study
    title: Acknowledgments
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: acknowledgments
    owner: Study
    domain_of:
    - Study
    range: string
  citationStatement:
    name: citationStatement
    definition_uri: include:citationStatement
    description: Statement that secondary data users should use to acknowledge use
      of this dataset. E.g., "The results analyzed and <published or shown> here are
      based in whole or in part upon data generated by the INCLUDE (INvestigation
      of Co-occurring conditions across the Lifespan to Understand Down syndromE)
      Project <insert accession number(s) and/or study DOI(s)>, and were accessed
      from the INCLUDE Data Hub and <insert other database(s)>."
    title: Citation Statement
    from_schema: https://w3id.org/include
    rank: 1000
    multivalued: true
    alias: citationStatement
    owner: Study
    domain_of:
    - Study
    range: string