Class: Participant-Sample-DataFile Manifest (ParticipantSampleDataFileManifest)

List of Participants and/or Samples in DataFiles with multiple Participants and/or Samples

URI: include:ParticipantSampleDataFileManifest

classDiagram class ParticipantSampleDataFileManifest click ParticipantSampleDataFileManifest href "../ParticipantSampleDataFileManifest/" ParticipantSampleDataFileManifest : fileName ParticipantSampleDataFileManifest --> "1" DataFile : fileName click DataFile href "../DataFile/" ParticipantSampleDataFileManifest : participantExternalId ParticipantSampleDataFileManifest --> "1" Participant : participantExternalId click Participant href "../Participant/" ParticipantSampleDataFileManifest : sampleExternalId ParticipantSampleDataFileManifest --> "1" Biospecimen : sampleExternalId click Biospecimen href "../Biospecimen/" ParticipantSampleDataFileManifest : studyCode ParticipantSampleDataFileManifest --> "1" Study : studyCode click Study href "../Study/"

Slots

Name	Cardinality and Range	Description	Inheritance
studyCode	1 Study	Unique identifier for the study (generally a short acronym)	direct
participantExternalId	1 Participant	Unique, de-identified identifier for the participant, assigned by data contri...	direct
sampleExternalId	1 Biospecimen	Unique identifier for sample, assigned by data contributor	direct
fileName	1 DataFile	Name of file, assigned by data contributor	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/include

Mappings

Mapping Type	Mapped Value
self	include:ParticipantSampleDataFileManifest
native	include:ParticipantSampleDataFileManifest

LinkML Source

Direct

name: ParticipantSampleDataFileManifest
definition_uri: include:ParticipantSampleDataFileManifest
description: List of Participants and/or Samples in DataFiles with multiple Participants
  and/or Samples
title: Participant-Sample-DataFile Manifest
from_schema: https://w3id.org/include
slots:
- studyCode
- participantExternalId
- sampleExternalId
- fileName
slot_usage:
  studyCode:
    name: studyCode
    range: Study
  fileName:
    name: fileName
    range: DataFile
  participantExternalId:
    name: participantExternalId
    range: Participant
  sampleExternalId:
    name: sampleExternalId
    range: Biospecimen

Induced

name: ParticipantSampleDataFileManifest
definition_uri: include:ParticipantSampleDataFileManifest
description: List of Participants and/or Samples in DataFiles with multiple Participants
  and/or Samples
title: Participant-Sample-DataFile Manifest
from_schema: https://w3id.org/include
slot_usage:
  studyCode:
    name: studyCode
    range: Study
  fileName:
    name: fileName
    range: DataFile
  participantExternalId:
    name: participantExternalId
    range: Participant
  sampleExternalId:
    name: sampleExternalId
    range: Biospecimen
attributes:
  studyCode:
    name: studyCode
    definition_uri: include:studyCode
    description: Unique identifier for the study (generally a short acronym)
    title: Study Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyCode
    owner: ParticipantSampleDataFileManifest
    domain_of:
    - Study
    - ClinicalTrial
    - Dataset
    - DatasetManifest
    - ParticipantSampleDataFileManifest
    - Participant
    - Condition
    - Biospecimen
    - DataFile
    range: Study
    required: true
  participantExternalId:
    name: participantExternalId
    definition_uri: include:participantExternalId
    description: Unique, de-identified identifier for the participant, assigned by
      data contributor. External IDs must be two steps removed from personal information
      in the study records.
    title: Participant External ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantExternalId
    owner: ParticipantSampleDataFileManifest
    domain_of:
    - ParticipantSampleDataFileManifest
    - Participant
    - Condition
    - Biospecimen
    - DataFile
    range: Participant
    required: true
  sampleExternalId:
    name: sampleExternalId
    definition_uri: include:sampleExternalId
    description: Unique identifier for sample, assigned by data contributor. A sample
      is a unique biological material; two samples with two different IDs are biologically
      distinct.
    title: Sample External ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: sampleExternalId
    owner: ParticipantSampleDataFileManifest
    domain_of:
    - ParticipantSampleDataFileManifest
    - Biospecimen
    - DataFile
    range: Biospecimen
    required: true
  fileName:
    name: fileName
    definition_uri: include:fileName
    description: Name of file, assigned by data contributor
    title: File Name
    from_schema: https://w3id.org/include
    rank: 1000
    alias: fileName
    owner: ParticipantSampleDataFileManifest
    domain_of:
    - DatasetManifest
    - ParticipantSampleDataFileManifest
    - DataFile
    range: DataFile
    required: true