Class: Participant (Participant)

Demographic and clinical information about the participant

classDiagram class Participant click Participant href "../Participant" Thing <|-- Participant click Thing href "../Thing" Participant : ageAtFirstPatientEngagement Participant : ageAtLastVitalStatus Participant : downSyndromeStatus Participant --> "1" EnumDownSyndromeStatus : downSyndromeStatus click EnumDownSyndromeStatus href "../EnumDownSyndromeStatus" Participant : ethnicity Participant --> "1" EnumEthnicity : ethnicity click EnumEthnicity href "../EnumEthnicity" Participant : familyId Participant : familyRelationship Participant --> "1" EnumFamilyRelationship : familyRelationship click EnumFamilyRelationship href "../EnumFamilyRelationship" Participant : familyType Participant --> "1" EnumFamilyType : familyType click EnumFamilyType href "../EnumFamilyType" Participant : fatherId Participant : firstPatientEngagementEvent Participant : motherId Participant : otherFamilyMemberId Participant : outcomesVitalStatus Participant --> "0..1" EnumVitalStatus : outcomesVitalStatus click EnumVitalStatus href "../EnumVitalStatus" Participant : participantExternalId Participant : participantGlobalId Participant : race Participant --> "1" EnumRace : race click EnumRace href "../EnumRace" Participant : sex Participant --> "1" EnumSex : sex click EnumSex href "../EnumSex" Participant : siblingId Participant : studyCode Participant --> "1" EnumStudyCode : studyCode click EnumStudyCode href "../EnumStudyCode"

Inheritance

Thing
- Participant

Slots

Name	Cardinality and Range	Description	Inheritance
studyCode	1 EnumStudyCode	Unique identifier for the study (generally a short acronym)	direct
participantGlobalId	1 String	Unique INCLUDE global identifier for the participant, assigned by DCC	direct
participantExternalId	1 String	Unique, de-identified identifier for the participant, assigned by data contri...	direct
familyId	0..1 String	Unique identifer for family to which Participant belongs, assigned by data co...	direct
familyType	1 EnumFamilyType	Structure of family members participating in the study	direct
fatherId	0..1 String	Participant External ID for Participant's father (NA if Participant is not th...	direct
motherId	0..1 String	Participant External ID for Participant's mother (NA if Participant is not th...	direct
siblingId	0..1 String	Participant External ID for Participant's sibling(s) (NA if Participant is no...	direct
otherFamilyMemberId	0..1 String	Participant External ID for Participant's other family members (NA if Partici...	direct
familyRelationship	1 EnumFamilyRelationship	Relationship of Participant to proband	direct
sex	1 EnumSex	Sex of Participant	direct
race	1 EnumRace	Race of Participant	direct
ethnicity	1 EnumEthnicity	Ethnicity of Participant	direct
downSyndromeStatus	1 EnumDownSyndromeStatus	Down Syndrome status of participant	direct
ageAtFirstPatientEngagement	1 Integer	Age in days of Participant at first recorded study event (enrollment, visit, ...	direct
firstPatientEngagementEvent	1 String	Event for which Age at First Patient Engagement is given (e	direct
outcomesVitalStatus	0..1 EnumVitalStatus	Whether participant is alive or dead	direct
ageAtLastVitalStatus	0..1 Integer	Age in days when participant's vital status was last recorded	direct

Identifier and Mapping Information

Annotations

property	value
required	True

Schema Source

from schema: https://w3id.org/include

Mappings

Mapping Type	Mapped Value
self	include:Participant
native	include:Participant

LinkML Source

Direct

name: Participant
definition_uri: include:Participant
annotations:
  required:
    tag: required
    value: 'True'
  requires_component:
    tag: requires_component
    value: Study,DataFile
description: Demographic and clinical information about the participant
title: Participant
from_schema: https://w3id.org/include
is_a: Thing
slots:
- studyCode
- participantGlobalId
- participantExternalId
- familyId
- familyType
- fatherId
- motherId
- siblingId
- otherFamilyMemberId
- familyRelationship
- sex
- race
- ethnicity
- downSyndromeStatus
- ageAtFirstPatientEngagement
- firstPatientEngagementEvent
- outcomesVitalStatus
- ageAtLastVitalStatus

Induced

name: Participant
definition_uri: include:Participant
annotations:
  required:
    tag: required
    value: 'True'
  requires_component:
    tag: requires_component
    value: Study,DataFile
description: Demographic and clinical information about the participant
title: Participant
from_schema: https://w3id.org/include
is_a: Thing
attributes:
  studyCode:
    name: studyCode
    definition_uri: include:studyCode
    description: Unique identifier for the study (generally a short acronym)
    title: Study Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyCode
    owner: Participant
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    - Study
    - Dataset
    - DatasetManifest
    range: enum_studyCode
    required: true
  participantGlobalId:
    name: participantGlobalId
    definition_uri: include:participantGlobalId
    description: Unique INCLUDE global identifier for the participant, assigned by
      DCC
    title: Participant Global ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantGlobalId
    owner: Participant
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    range: string
    required: true
  participantExternalId:
    name: participantExternalId
    definition_uri: include:participantExternalId
    description: Unique, de-identified identifier for the participant, assigned by
      data contributor. External IDs must be two steps removed from personal information
      in the study records.
    title: Participant External ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantExternalId
    owner: Participant
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    range: string
    required: true
  familyId:
    name: familyId
    definition_uri: include:familyId
    description: Unique identifer for family to which Participant belongs, assigned
      by data contributor
    title: Family ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: familyId
    owner: Participant
    domain_of:
    - Participant
    range: string
  familyType:
    name: familyType
    definition_uri: include:familyType
    description: Structure of family members participating in the study
    title: Family Type
    from_schema: https://w3id.org/include
    rank: 1000
    alias: familyType
    owner: Participant
    domain_of:
    - Participant
    range: enum_familyType
    required: true
  fatherId:
    name: fatherId
    definition_uri: include:fatherId
    description: Participant External ID for Participant's father (NA if Participant
      is not the proband)
    title: Father ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: fatherId
    owner: Participant
    domain_of:
    - Participant
    range: string
  motherId:
    name: motherId
    definition_uri: include:motherId
    description: Participant External ID for Participant's mother (NA if Participant
      is not the proband)
    title: Mother ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: motherId
    owner: Participant
    domain_of:
    - Participant
    range: string
  siblingId:
    name: siblingId
    definition_uri: include:siblingId
    description: Participant External ID for Participant's sibling(s) (NA if Participant
      is not the proband)
    title: Sibling ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: siblingId
    owner: Participant
    domain_of:
    - Participant
    range: string
  otherFamilyMemberId:
    name: otherFamilyMemberId
    definition_uri: include:otherFamilyMemberId
    description: Participant External ID for Participant's other family members (NA
      if Participant is not the proband)
    title: Other Family Member ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: otherFamilyMemberId
    owner: Participant
    domain_of:
    - Participant
    range: string
  familyRelationship:
    name: familyRelationship
    definition_uri: include:familyRelationship
    description: Relationship of Participant to proband
    title: Family Relationship
    from_schema: https://w3id.org/include
    rank: 1000
    alias: familyRelationship
    owner: Participant
    domain_of:
    - Participant
    range: enum_familyRelationship
    required: true
  sex:
    name: sex
    definition_uri: include:sex
    description: Sex of Participant
    title: Sex
    from_schema: https://w3id.org/include
    rank: 1000
    alias: sex
    owner: Participant
    domain_of:
    - Participant
    range: enum_sex
    required: true
  race:
    name: race
    definition_uri: include:race
    description: Race of Participant
    title: Race
    from_schema: https://w3id.org/include
    rank: 1000
    alias: race
    owner: Participant
    domain_of:
    - Participant
    range: enum_race
    required: true
  ethnicity:
    name: ethnicity
    definition_uri: include:ethnicity
    description: Ethnicity of Participant
    title: Ethnicity
    from_schema: https://w3id.org/include
    rank: 1000
    alias: ethnicity
    owner: Participant
    domain_of:
    - Participant
    range: enum_ethnicity
    required: true
  downSyndromeStatus:
    name: downSyndromeStatus
    definition_uri: include:downSyndromeStatus
    description: Down Syndrome status of participant
    title: Down Syndrome Status
    from_schema: https://w3id.org/include
    rank: 1000
    alias: downSyndromeStatus
    owner: Participant
    domain_of:
    - Participant
    range: enum_downSyndromeStatus
    required: true
  ageAtFirstPatientEngagement:
    name: ageAtFirstPatientEngagement
    definition_uri: include:ageAtFirstPatientEngagement
    description: Age in days of Participant at first recorded study event (enrollment,
      visit, observation, sample collection, survey completion, etc.). Age at enrollment
      is preferred, if available.
    title: Age at First Patient Engagement
    from_schema: https://w3id.org/include
    rank: 1000
    alias: ageAtFirstPatientEngagement
    owner: Participant
    domain_of:
    - Participant
    range: integer
    required: true
    minimum_value: 0
    maximum_value: 33000
  firstPatientEngagementEvent:
    name: firstPatientEngagementEvent
    definition_uri: include:firstPatientEngagementEvent
    description: Event for which Age at First Patient Engagement is given (e.g. enrollment,
      visit, observation, sample collection, survey completion, etc.). Age at enrollment
      is preferred, if available.
    title: First Patient Engagement Event
    from_schema: https://w3id.org/include
    rank: 1000
    alias: firstPatientEngagementEvent
    owner: Participant
    domain_of:
    - Participant
    range: string
    required: true
  outcomesVitalStatus:
    name: outcomesVitalStatus
    definition_uri: include:outcomesVitalStatus
    description: Whether participant is alive or dead
    title: Outcomes Vital Status
    from_schema: https://w3id.org/include
    rank: 1000
    alias: outcomesVitalStatus
    owner: Participant
    domain_of:
    - Participant
    range: enum_vital_status
  ageAtLastVitalStatus:
    name: ageAtLastVitalStatus
    definition_uri: include:ageAtLastVitalStatus
    description: Age in days when participant's vital status was last recorded
    title: Age at Last Vital Status
    from_schema: https://w3id.org/include
    rank: 1000
    alias: ageAtLastVitalStatus
    owner: Participant
    domain_of:
    - Participant
    range: integer
    minimum_value: 0
    maximum_value: 33000