Class: Condition (Condition)

Co-occurring conditions and other observations for the participant

classDiagram class Condition click Condition href "../Condition" Thing <|-- Condition click Thing href "../Thing" Condition : ageAtConditionMeasureObservation Condition : conditionDataSource Condition --> "0..1" EnumConditionDataSource : conditionDataSource click EnumConditionDataSource href "../EnumConditionDataSource" Condition : conditionInterpretation Condition --> "0..1" EnumConditionInterpretation : conditionInterpretation click EnumConditionInterpretation href "../EnumConditionInterpretation" Condition : conditionMeasureSourceText Condition : conditionStatus Condition --> "0..1" EnumConditionStatus : conditionStatus click EnumConditionStatus href "../EnumConditionStatus" Condition : eventId Condition : eventType Condition : hpoCode Condition : hpoLabel Condition : maxoCode Condition : maxoLabel Condition : measureUnit Condition : measureValue Condition : mondoCode Condition : mondoLabel Condition : otherCode Condition : otherLabel Condition : participantExternalId Condition : participantGlobalId Condition : studyCode Condition --> "1" EnumStudyCode : studyCode click EnumStudyCode href "../EnumStudyCode"

Inheritance

Thing
- Condition

Slots

Name	Cardinality and Range	Description	Inheritance
studyCode	1 EnumStudyCode	Unique identifier for the study (generally a short acronym)	direct
participantGlobalId	1 String	Unique INCLUDE global identifier for the participant, assigned by DCC	direct
participantExternalId	1 String	Unique, de-identified identifier for the participant, assigned by data contri...	direct
eventId	0..1 String	Identifier for event (Visit, Survey completion, Sample collection, etc	direct
eventType	0..1 String	Type of event for which Event ID is given (Visit, Survey completion, Sample c...	direct
conditionMeasureSourceText	0..1 String	Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ...	direct
ageAtConditionMeasureObservation	0..1 Integer	Age in days at which Condition or Measure was observed, recorded, or diagnose...	direct
conditionInterpretation	0..1 EnumConditionInterpretation	Whether Condition was observed or not	direct
conditionStatus	0..1 EnumConditionStatus	Whether the Condition is ongoing, has been resolved, or this is a general his...	direct
conditionDataSource	0..1 EnumConditionDataSource	Whether Condition information was obtained by the investigator or reported by...	direct
hpoLabel	0..1 String	Label for Condition in the Human Phenotype Ontology (HPO)	direct
hpoCode	0..1 String	Code for Condition in the Human Phenotype Ontology (HPO)	direct
mondoLabel	0..1 String	Label for Condition in the Mondo Disease Ontology (MONDO)	direct
mondoCode	0..1 String	Code for Condition in the Mondo Disease Ontology (Mondo)	direct
maxoLabel	0..1 String	Label for Condition in the Medical Action Ontology (MAXO)	direct
maxoCode	0..1 String	Code for condition in the Medical Action Ontology (MAXO)	direct
otherLabel	0..1 String	Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO)	direct
otherCode	0..1 String	Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO)	direct
measureValue	0..1 Integer	Numeric value of Measure	direct
measureUnit	0..1 String	Unit that is associated with Measure Value (e	direct

Identifier and Mapping Information

Annotations

property	value
required	False

Schema Source

from schema: https://w3id.org/include

Mappings

Mapping Type	Mapped Value
self	include:Condition
native	include:Condition

LinkML Source

Direct

name: Condition
definition_uri: include:Condition
annotations:
  required:
    tag: required
    value: 'False'
description: Co-occurring conditions and other observations for the participant
title: Condition
from_schema: https://w3id.org/include
is_a: Thing
slots:
- studyCode
- participantGlobalId
- participantExternalId
- eventId
- eventType
- conditionMeasureSourceText
- ageAtConditionMeasureObservation
- conditionInterpretation
- conditionStatus
- conditionDataSource
- hpoLabel
- hpoCode
- mondoLabel
- mondoCode
- maxoLabel
- maxoCode
- otherLabel
- otherCode
- measureValue
- measureUnit

Induced

name: Condition
definition_uri: include:Condition
annotations:
  required:
    tag: required
    value: 'False'
description: Co-occurring conditions and other observations for the participant
title: Condition
from_schema: https://w3id.org/include
is_a: Thing
attributes:
  studyCode:
    name: studyCode
    definition_uri: include:studyCode
    description: Unique identifier for the study (generally a short acronym)
    title: Study Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: studyCode
    owner: Condition
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    - Study
    - Dataset
    - DatasetManifest
    range: enum_studyCode
    required: true
  participantGlobalId:
    name: participantGlobalId
    definition_uri: include:participantGlobalId
    description: Unique INCLUDE global identifier for the participant, assigned by
      DCC
    title: Participant Global ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantGlobalId
    owner: Condition
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    range: string
    required: true
  participantExternalId:
    name: participantExternalId
    definition_uri: include:participantExternalId
    description: Unique, de-identified identifier for the participant, assigned by
      data contributor. External IDs must be two steps removed from personal information
      in the study records.
    title: Participant External ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: participantExternalId
    owner: Condition
    domain_of:
    - Biospecimen
    - DataFile
    - Participant
    - Condition
    range: string
    required: true
  eventId:
    name: eventId
    definition_uri: include:eventId
    description: Identifier for event (Visit, Survey completion, Sample collection,
      etc.) to which the Condition data are linked, if applicable. There may be multiple
      events linked to a Participant.
    title: Event ID
    from_schema: https://w3id.org/include
    rank: 1000
    alias: eventId
    owner: Condition
    domain_of:
    - Condition
    range: string
  eventType:
    name: eventType
    definition_uri: include:eventType
    description: Type of event for which Event ID is given (Visit, Survey completion,
      Sample collection, etc.)
    title: Event Type
    from_schema: https://w3id.org/include
    rank: 1000
    alias: eventType
    owner: Condition
    domain_of:
    - Condition
    range: string
  conditionMeasureSourceText:
    name: conditionMeasureSourceText
    definition_uri: include:conditionMeasureSourceText
    description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation
      with numeric value), as described by data contributor. The Down Syndrome Genetic
      Diagnosis will be rolled into this field.
    title: Condition or Measure Source Text
    from_schema: https://w3id.org/include
    rank: 1000
    alias: conditionMeasureSourceText
    owner: Condition
    domain_of:
    - Condition
    range: string
  ageAtConditionMeasureObservation:
    name: ageAtConditionMeasureObservation
    definition_uri: include:ageAtConditionMeasureObservation
    description: Age in days at which Condition or Measure was observed, recorded,
      or diagnosed
    title: Age At Condition or Measure Observation
    from_schema: https://w3id.org/include
    rank: 1000
    alias: ageAtConditionMeasureObservation
    owner: Condition
    domain_of:
    - Condition
    range: integer
    minimum_value: 0
    maximum_value: 33000
  conditionInterpretation:
    name: conditionInterpretation
    definition_uri: include:conditionInterpretation
    description: Whether Condition was observed or not
    title: Condition Interpretation
    from_schema: https://w3id.org/include
    rank: 1000
    alias: conditionInterpretation
    owner: Condition
    domain_of:
    - Condition
    range: enum_conditionInterpretation
  conditionStatus:
    name: conditionStatus
    definition_uri: include:conditionStatus
    description: Whether the Condition is ongoing, has been resolved, or this is a
      general history of the condition without known dates
    title: Condition Status
    from_schema: https://w3id.org/include
    rank: 1000
    alias: conditionStatus
    owner: Condition
    domain_of:
    - Condition
    range: enum_conditionStatus
  conditionDataSource:
    name: conditionDataSource
    definition_uri: include:conditionDataSource
    description: Whether Condition information was obtained by the investigator or
      reported by participant/family member
    title: Condition Data Source
    from_schema: https://w3id.org/include
    rank: 1000
    alias: conditionDataSource
    owner: Condition
    domain_of:
    - Condition
    range: enum_conditionDataSource
  hpoLabel:
    name: hpoLabel
    definition_uri: include:hpoLabel
    description: Label for Condition in the Human Phenotype Ontology (HPO)
    title: HPO Label
    from_schema: https://w3id.org/include
    rank: 1000
    alias: hpoLabel
    owner: Condition
    domain_of:
    - Condition
    range: string
  hpoCode:
    name: hpoCode
    definition_uri: include:hpoCode
    description: Code for Condition in the Human Phenotype Ontology (HPO)
    title: HPO Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: hpoCode
    owner: Condition
    domain_of:
    - Condition
    range: string
  mondoLabel:
    name: mondoLabel
    definition_uri: include:mondoLabel
    description: Label for Condition in the Mondo Disease Ontology (MONDO)
    title: MONDO Label
    from_schema: https://w3id.org/include
    rank: 1000
    alias: mondoLabel
    owner: Condition
    domain_of:
    - Condition
    range: string
  mondoCode:
    name: mondoCode
    definition_uri: include:mondoCode
    description: Code for Condition in the Mondo Disease Ontology (Mondo)
    title: MONDO Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: mondoCode
    owner: Condition
    domain_of:
    - Condition
    range: string
  maxoLabel:
    name: maxoLabel
    definition_uri: include:maxoLabel
    description: Label for Condition in the Medical Action Ontology (MAXO)
    title: MAXO Label
    from_schema: https://w3id.org/include
    rank: 1000
    alias: maxoLabel
    owner: Condition
    domain_of:
    - Condition
    range: string
  maxoCode:
    name: maxoCode
    definition_uri: include:maxoCode
    description: Code for condition in the Medical Action Ontology (MAXO)
    title: MAXO Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: maxoCode
    owner: Condition
    domain_of:
    - Condition
    range: string
  otherLabel:
    name: otherLabel
    definition_uri: include:otherLabel
    description: Label for Condition in another ontology (if no match in HPO, MONDO,
      or MAXO)
    title: Other Label
    from_schema: https://w3id.org/include
    rank: 1000
    alias: otherLabel
    owner: Condition
    domain_of:
    - Condition
    range: string
  otherCode:
    name: otherCode
    definition_uri: include:otherCode
    description: Code for Condition in another ontology (if no match in HPO, MONDO,
      or MAXO)
    title: Other Code
    from_schema: https://w3id.org/include
    rank: 1000
    alias: otherCode
    owner: Condition
    domain_of:
    - Condition
    range: string
  measureValue:
    name: measureValue
    definition_uri: include:measureValue
    description: Numeric value of Measure
    title: Measure Value
    from_schema: https://w3id.org/include
    rank: 1000
    alias: measureValue
    owner: Condition
    domain_of:
    - Condition
    range: integer
  measureUnit:
    name: measureUnit
    definition_uri: include:measureUnit
    description: Unit that is associated with Measure Value (e.g. kg, cm, %, x10^9/L,
      etc.)
    title: Measure Unit
    from_schema: https://w3id.org/include
    rank: 1000
    alias: measureUnit
    owner: Condition
    domain_of:
    - Condition
    range: string