Class: Sample (Sample)

A functionally equivalent specimen taken from a participant or processed from such a sample.

URI: [includedcc:Sample](https://includedcc.org/include-access-model/Sample)

classDiagram class Sample click Sample href "../Sample/" Record <|-- Sample click Record href "../Record/" Sample : access_policy_id Sample --> "0..1" AccessPolicy : access_policy_id click AccessPolicy href "../AccessPolicy/" Sample : availability_status Sample --> "0..1" EnumAvailabilityStatus : availability_status click EnumAvailabilityStatus href "../EnumAvailabilityStatus/" Sample : biospecimen_collection_id Sample --> "0..1" BiospecimenCollection : biospecimen_collection_id click BiospecimenCollection href "../BiospecimenCollection/" Sample : external_id Sample : parent_sample_id Sample --> "0..1" Sample : parent_sample_id click Sample href "../Sample/" Sample : processing Sample : quantity_number Sample : quantity_unit Sample --> "0..1" Concept : quantity_unit click Concept href "../Concept/" Sample : sample_id Sample : sample_type Sample : storage_method Sample : study_id Sample --> "0..1" Study : study_id click Study href "../Study/"

## Inheritance * **Sample** [ [Record](Record.md)] ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [sample_id](sample_id.md) | 1
[BsGlobalID](BsGlobalID.md) | The unique identifier for this Sample | direct | | [biospecimen_collection_id](biospecimen_collection_id.md) | 0..1
[BiospecimenCollection](BiospecimenCollection.md) | Biospecimen Collection during which this sample was generated | direct | | [parent_sample_id](parent_sample_id.md) | 0..1
[Sample](Sample.md) | Sample from which this sample is derived | direct | | [sample_type](sample_type.md) | 1
[Uriorcurie](Uriorcurie.md) | Type of material of which this Sample is comprised | direct | | [processing](processing.md) | *
[Uriorcurie](Uriorcurie.md) | Processing that was applied to the Parent Sample or from the Biospecimen Coll... | direct | | [availability_status](availability_status.md) | 0..1
[EnumAvailabilityStatus](EnumAvailabilityStatus.md) | Can this Sample be requested for further analysis? | direct | | [storage_method](storage_method.md) | *
[Uriorcurie](Uriorcurie.md) | Sample storage method, eg, Frozen or with additives | direct | | [quantity_number](quantity_number.md) | 0..1
[Float](Float.md) | The total quantity of the specimen | direct | | [quantity_unit](quantity_unit.md) | 0..1
[Concept](Concept.md) | The structured term defining the units of the quantity | direct | | [external_id](external_id.md) | *
[Uriorcurie](Uriorcurie.md) | Other identifiers for this entity, eg, from the submitting study or in system... | [Record](Record.md) | | [access_policy_id](access_policy_id.md) | 0..1
[AccessPolicy](AccessPolicy.md) | Global identifier for the access policy that applies to this row of data | [Record](Record.md) | | [study_id](study_id.md) | 0..1
[Study](Study.md) | INCLUDE Global ID for the study | [Record](Record.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Sample](Sample.md) | [parent_sample_id](parent_sample_id.md) | range | [Sample](Sample.md) | | [Aliquot](Aliquot.md) | [sample_id](sample_id.md) | range | [Sample](Sample.md) | | [File](File.md) | [sample_id](sample_id.md) | range | [Sample](Sample.md) | | [Assay](Assay.md) | [sample_id](sample_id.md) | range | [Sample](Sample.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://includedcc.org/include-access-model ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | includedcc:Sample | | native | includedcc:Sample | ## LinkML Source ### Direct

name: Sample
description: A functionally equivalent specimen taken from a participant or processed
  from such a sample.
title: Sample
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slots:
- sample_id
- biospecimen_collection_id
- parent_sample_id
- sample_type
- processing
- availability_status
- storage_method
- quantity_number
- quantity_unit
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
    range: bsGlobalID
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.

### Induced

name: Sample
description: A functionally equivalent specimen taken from a participant or processed
  from such a sample.
title: Sample
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
    range: bsGlobalID
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.
attributes:
  sample_id:
    name: sample_id
    description: The unique identifier for this Sample.
    title: Sample ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    - File
    - Assay
    range: bsGlobalID
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.
    title: Biospecimen Collection ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    - BiospecimenCollection
    range: BiospecimenCollection
  parent_sample_id:
    name: parent_sample_id
    description: Sample from which this sample is derived
    title: Parent Sample ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    range: Sample
    inlined: false
  sample_type:
    name: sample_type
    description: Type of material of which this Sample is comprised. UBERON is recommended.
    title: Sample Type
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    required: true
  processing:
    name: processing
    description: Processing that was applied to the Parent Sample or from the Biospecimen
      Collection that yielded this distinct sample. OBI is recommended.
    title: Sample Processing
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    multivalued: true
  availability_status:
    name: availability_status
    description: Can this Sample be requested for further analysis?
    title: Sample Availability
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: EnumAvailabilityStatus
  storage_method:
    name: storage_method
    description: Sample storage method, eg, Frozen or with additives. OBI may be suitable,
      or ChEBI for additives.
    title: Sample Storage Method
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    multivalued: true
  quantity_number:
    name: quantity_number
    description: The total quantity of the specimen
    title: Quantity
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: float
  quantity_unit:
    name: quantity_unit
    description: The structured term defining the units of the quantity.
    title: Quantity Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: Concept
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    owner: Sample
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false