Class: File (File)
File
URI: [includedcc:File](https://includedcc.org/include-access-model/File)
[DrGlobalID](DrGlobalID.md) | Unique identifier for this File | direct | | [subject_id](subject_id.md) | *
[Subject](Subject.md) | INCLUDE Global ID for the Subject | direct | | [sample_id](sample_id.md) | *
[Sample](Sample.md) | The unique identifier for this Sample | direct | | [filename](filename.md) | 0..1
[String](String.md) | The name of the file | direct | | [format](format.md) | 0..1
[EnumEDAMFormats](EnumEDAMFormats.md) | The format of the file | direct | | [file_extension](file_extension.md) | 1
[String](String.md) | Typically a 3-4 letter code at the end of a filename that identifies the file... | direct | | [data_category](data_category.md) | 0..1
[Concept](Concept.md) or
[EnumDataCategory](EnumDataCategory.md) | General category of data in this Record (e | direct | | [data_type](data_type.md) | 0..1
[EnumEDAMDataTypes](EnumEDAMDataTypes.md) | The type of data within this file | direct | | [format](format.md) | 0..1
[EnumEDAMFormats](EnumEDAMFormats.md) | The format of the file | direct | | [size](size.md) | 0..1
[Integer](Integer.md) | Size of the file, in Bytes | direct | | [internal_uri](internal_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | URI/URL for internal access to the data | direct | | [release_uri](release_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | URI/URL for controlled or open access to the data | direct | | [drs_uri](drs_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | DRS location to access the data | direct | | [storage_class](storage_class.md) | 0..1
[String](String.md) | Storage class of the object, reflecting cost and access characteristics | direct | | [hash](hash.md) | *
[FileHash](FileHash.md) | File hash information | direct | | [availability](availability.md) | 0..1
[EnumAvailabilityStatus](EnumAvailabilityStatus.md) | Is or was this file available to users? | direct | | [external_id](external_id.md) | *
[Uriorcurie](Uriorcurie.md) | Other identifiers for this entity, eg, from the submitting study or in system... | [Record](Record.md) | | [access_policy_id](access_policy_id.md) | 0..1
[AccessPolicy](AccessPolicy.md) | Global identifier for the access policy that applies to this row of data | [Record](Record.md) | | [study_id](study_id.md) | 0..1
[Study](Study.md) | INCLUDE Global ID for the study | [Record](Record.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Assay](Assay.md) | [file_id](file_id.md) | range | [File](File.md) | | [Dataset](Dataset.md) | [file_id](file_id.md) | range | [File](File.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://includedcc.org/include-access-model ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | includedcc:File | | native | includedcc:File | ## LinkML Source ### Direct
### Induced
classDiagram
class File
click File href "../File/"
Record <|-- File
click Record href "../Record/"
File : access_policy_id
File --> "0..1" AccessPolicy : access_policy_id
click AccessPolicy href "../AccessPolicy/"
File : availability
File --> "0..1" EnumAvailabilityStatus : availability
click EnumAvailabilityStatus href "../EnumAvailabilityStatus/"
File : data_category
File --> "0..1" Concept : data_category
click Concept href "../Concept/"
File : data_type
File --> "0..1" EnumEDAMDataTypes : data_type
click EnumEDAMDataTypes href "../EnumEDAMDataTypes/"
File : drs_uri
File : external_id
File : file_extension
File : file_id
File : filename
File : format
File --> "0..1" EnumEDAMFormats : format
click EnumEDAMFormats href "../EnumEDAMFormats/"
File : hash
File --> "*" FileHash : hash
click FileHash href "../FileHash/"
File : internal_uri
File : release_uri
File : sample_id
File --> "*" Sample : sample_id
click Sample href "../Sample/"
File : size
File : storage_class
File : study_id
File --> "0..1" Study : study_id
click Study href "../Study/"
File : subject_id
File --> "*" Subject : subject_id
click Subject href "../Subject/"
## Inheritance
* **File** [ [Record](Record.md)]
## Slots
| Name | Cardinality and Range | Description | Inheritance |
| --- | --- | --- | --- |
| [file_id](file_id.md) | 1 [DrGlobalID](DrGlobalID.md) | Unique identifier for this File | direct | | [subject_id](subject_id.md) | *
[Subject](Subject.md) | INCLUDE Global ID for the Subject | direct | | [sample_id](sample_id.md) | *
[Sample](Sample.md) | The unique identifier for this Sample | direct | | [filename](filename.md) | 0..1
[String](String.md) | The name of the file | direct | | [format](format.md) | 0..1
[EnumEDAMFormats](EnumEDAMFormats.md) | The format of the file | direct | | [file_extension](file_extension.md) | 1
[String](String.md) | Typically a 3-4 letter code at the end of a filename that identifies the file... | direct | | [data_category](data_category.md) | 0..1
[Concept](Concept.md) or
[EnumDataCategory](EnumDataCategory.md) | General category of data in this Record (e | direct | | [data_type](data_type.md) | 0..1
[EnumEDAMDataTypes](EnumEDAMDataTypes.md) | The type of data within this file | direct | | [format](format.md) | 0..1
[EnumEDAMFormats](EnumEDAMFormats.md) | The format of the file | direct | | [size](size.md) | 0..1
[Integer](Integer.md) | Size of the file, in Bytes | direct | | [internal_uri](internal_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | URI/URL for internal access to the data | direct | | [release_uri](release_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | URI/URL for controlled or open access to the data | direct | | [drs_uri](drs_uri.md) | 0..1
[Uriorcurie](Uriorcurie.md) | DRS location to access the data | direct | | [storage_class](storage_class.md) | 0..1
[String](String.md) | Storage class of the object, reflecting cost and access characteristics | direct | | [hash](hash.md) | *
[FileHash](FileHash.md) | File hash information | direct | | [availability](availability.md) | 0..1
[EnumAvailabilityStatus](EnumAvailabilityStatus.md) | Is or was this file available to users? | direct | | [external_id](external_id.md) | *
[Uriorcurie](Uriorcurie.md) | Other identifiers for this entity, eg, from the submitting study or in system... | [Record](Record.md) | | [access_policy_id](access_policy_id.md) | 0..1
[AccessPolicy](AccessPolicy.md) | Global identifier for the access policy that applies to this row of data | [Record](Record.md) | | [study_id](study_id.md) | 0..1
[Study](Study.md) | INCLUDE Global ID for the study | [Record](Record.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Assay](Assay.md) | [file_id](file_id.md) | range | [File](File.md) | | [Dataset](Dataset.md) | [file_id](file_id.md) | range | [File](File.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://includedcc.org/include-access-model ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | includedcc:File | | native | includedcc:File | ## LinkML Source ### Direct
name: File
description: File
title: File
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slots:
- file_id
- subject_id
- sample_id
- filename
- format
- file_extension
- data_category
- data_type
- format
- size
- internal_uri
- release_uri
- drs_uri
- storage_class
- hash
- availability
slot_usage:
file_id:
name: file_id
identifier: true
range: drGlobalID
required: true
subject_id:
name: subject_id
multivalued: true
sample_id:
name: sample_id
multivalued: true
name: File
description: File
title: File
from_schema: https://includedcc.org/include-access-model
mixins:
- Record
slot_usage:
file_id:
name: file_id
identifier: true
range: drGlobalID
required: true
subject_id:
name: subject_id
multivalued: true
sample_id:
name: sample_id
multivalued: true
attributes:
file_id:
name: file_id
description: Unique identifier for this File.
title: File ID
from_schema: https://includedcc.org/include-access-model
rank: 1000
identifier: true
owner: File
domain_of:
- File
- Assay
- Dataset
range: drGlobalID
required: true
subject_id:
name: subject_id
description: INCLUDE Global ID for the Subject
title: Study ID
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- Subject
- Demographics
- FamilyRelationship
- FamilyMembership
- SubjectAssertion
- Encounter
- File
- Assay
range: Subject
multivalued: true
sample_id:
name: sample_id
description: The unique identifier for this Sample.
title: Sample ID
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- Sample
- Aliquot
- File
- Assay
range: Sample
multivalued: true
filename:
name: filename
description: The name of the file.
title: Filename
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: string
format:
name: format
description: The format of the file.
title: File Format
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: EnumEDAMFormats
file_extension:
name: file_extension
description: Typically a 3-4 letter code at the end of a filename that identifies
the file format. Empty string for no extension.
title: File Extension
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: string
required: true
data_category:
name: data_category
description: General category of data in this Record (e.g. Clinical, Genomics,
etc)
title: Data Category
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- StudyMetadata
- File
range: Concept
any_of:
- range: Concept
- range: EnumDataCategory
data_type:
name: data_type
description: The type of data within this file.
title: Data Type
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: EnumEDAMDataTypes
size:
name: size
description: Size of the file, in Bytes. May require BigInt or similar.
title: File Size
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: integer
unit:
ucum_code: By
internal_uri:
name: internal_uri
description: URI/URL for internal access to the data. May be temporary.
title: Internal Staging Location
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: uriorcurie
release_uri:
name: release_uri
description: URI/URL for controlled or open access to the data.
title: Release Location
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: uriorcurie
drs_uri:
name: drs_uri
description: DRS location to access the data.
title: DRS URI
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: uriorcurie
storage_class:
name: storage_class
description: Storage class of the object, reflecting cost and access characteristics.
title: Storage Class
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: string
hash:
name: hash
description: File hash information
title: File Hash
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: FileHash
multivalued: true
availability:
name: availability
description: Is or was this file available to users?
title: File Availability
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- File
range: EnumAvailabilityStatus
external_id:
name: external_id
description: Other identifiers for this entity, eg, from the submitting study
or in systems like dbGaP
title: External Identifiers
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- Record
range: uriorcurie
required: false
multivalued: true
access_policy_id:
name: access_policy_id
description: Global identifier for the access policy that applies to this row
of data.
title: Access Policy ID
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- Record
- AccessPolicy
range: AccessPolicy
study_id:
name: study_id
description: INCLUDE Global ID for the study
title: Study ID
from_schema: https://includedcc.org/include-access-model
rank: 1000
owner: File
domain_of:
- Record
- StudyMetadata
range: Study
multivalued: false