Enum: Data Category (EnumDataCategory)
Categories of data which may be collected about participants.
URI: [includedcc:EnumDataCategory](https://includedcc.org/include-access-model/EnumDataCategory)
## Enumeration Source
**Reachable From:**
- **Source:** NONE
- **Nodes:** edam:topic_0003
- **Via:** rdfs:subClassOf
## Permissible Values
| Value | Meaning | Description | Additional Info |
| --- | --- | --- | --- |
| edam:topic_0077 | edam:topic_0077 | The processing and analysis of nucleic acid sequence, structural and other da... | Title: Nucleic acids
| | edam:topic_0078 | edam:topic_0078 | Archival, processing and analysis of protein data, typically molecular sequen... | Title: Proteins
| | edam:topic_0080 | edam:topic_0080 | The archival, processing and analysis of molecular sequences (monomer composi... | Title: Sequence analysis
| | edam:topic_0081 | edam:topic_0081 | The curation, processing, analysis and prediction of data about the structure... | Title: Structure analysis
| | edam:topic_0082 | edam:topic_0082 | The prediction of molecular structure, including the prediction, modelling, r... | Title: Structure prediction
| | edam:topic_0084 | edam:topic_0084 | The study of evolutionary relationships amongst organisms | Title: Phylogeny
| | edam:topic_0085 | edam:topic_0085 | The study of gene or protein functions and their interactions in totality in ... | Title: Functional genomics
| | edam:topic_0089 | edam:topic_0089 | The conceptualisation, categorisation and nomenclature (naming) of entities o... | Title: Ontology and terminology
| | edam:topic_0091 | edam:topic_0091 | The archival, curation, processing and analysis of complex biological data | Title: Bioinformatics
| | edam:topic_0092 | edam:topic_0092 | Rendering (drawing on a computer screen) or visualisation of molecular sequen... | Title: Data visualisation
| | edam:topic_0097 | edam:topic_0097 | The archival, curation, processing and analysis of nucleic acid structural in... | Title: Nucleic acid structure analysis
| | edam:topic_0099 | edam:topic_0099 | RNA sequences and structures | Title: RNA
| | edam:topic_0102 | edam:topic_0102 | The mapping of complete (typically nucleotide) sequences | Title: Mapping
| | edam:topic_0108 | edam:topic_0108 | The translation of mRNA into protein and subsequent protein processing in the... | Title: Protein expression
| | edam:topic_0114 | edam:topic_0114 | Gene structure, regions which make an RNA product and features such as promot... | Title: Gene structure
| | edam:topic_0121 | edam:topic_0121 | Proteomics is in the narrow sense (sensu stricto) the application of methods ... | Title: Proteomics
| | edam:topic_0122 | edam:topic_0122 | The elucidation of the three dimensional structure for all (available) protei... | Title: Structural genomics
| | edam:topic_0123 | edam:topic_0123 | The study of the physical and biochemical properties of peptides and proteins... | Title: Protein properties
| | edam:topic_0128 | edam:topic_0128 | Protein-protein, protein-DNA/RNA and protein-ligand interactions, including a... | Title: Protein interactions
| | edam:topic_0130 | edam:topic_0130 | Protein stability, folding (in 3D space) and protein sequence-structure-funct... | Title: Protein folding, stability and design
| | edam:topic_0140 | edam:topic_0140 | The study of how proteins are transported within and without the cell, includ... | Title: Protein targeting and localisation
| | edam:topic_0152 | edam:topic_0152 | Carbohydrates, typically including structural information | Title: Carbohydrates
| | edam:topic_0153 | edam:topic_0153 | Lipids and their structures | Title: Lipidomics
| | edam:topic_0154 | edam:topic_0154 | Small molecules of biological significance, typically archival, curation, pro... | Title: Small molecules
| | edam:topic_0157 | edam:topic_0157 | The archival, processing and analysis of the basic character composition of m... | Title: Sequence composition, complexity and repeats
| | edam:topic_0160 | edam:topic_0160 | The archival, detection, prediction and analysis of positional features such ... | Title: Sequence sites, features and motifs
| | edam:topic_0166 | edam:topic_0166 | Structural features or common 3D motifs within protein structures, including ... | Title: Protein structural motifs and surfaces
| | edam:topic_0176 | edam:topic_0176 | The study and simulation of molecular (typically protein) conformation using ... | Title: Molecular dynamics
| | edam:topic_0194 | edam:topic_0194 | The integrated study of evolutionary relationships and whole genome data, for... | Title: Phylogenomics
| | edam:topic_0196 | edam:topic_0196 | The assembly of fragments of a DNA sequence to reconstruct the original seque... | Title: Sequence assembly
| | edam:topic_0199 | edam:topic_0199 | Stable, naturally occurring mutations in a nucleotide sequence including alle... | Title: Genetic variation
| | edam:topic_0202 | edam:topic_0202 | The study of drugs and their effects or responses in living systems | Title: Pharmacology
| | edam:topic_0203 | edam:topic_0203 | The analysis of levels and patterns of synthesis of gene products (proteins a... | Title: Gene expression
| | edam:topic_0204 | edam:topic_0204 | The regulation of gene expression | Title: Gene regulation
| | edam:topic_0208 | edam:topic_0208 | The influence of genotype on drug response, for example by correlating gene e... | Title: Pharmacogenomics
| | edam:topic_0209 | edam:topic_0209 | The design and chemical synthesis of bioactive molecules, for example drugs o... | Title: Medicinal chemistry
| | edam:topic_0218 | edam:topic_0218 | The processing and analysis of natural language, such as scientific literatur... | Title: Natural language processing
| | edam:topic_0219 | edam:topic_0219 | Data curation and archival includes the preservation of data in a repository,... | Title: Data curation and archival
| | edam:topic_0593 | edam:topic_0593 | An analytical technique that exploits the magenetic properties of certain ato... | Title: NMR
| | edam:topic_0601 | edam:topic_0601 | Protein chemical modifications, e | Title: Protein modifications
| | edam:topic_0602 | edam:topic_0602 | Molecular interactions, biological pathways, networks and other models | Title: Molecular interactions, pathways and networks
| | edam:topic_0605 | edam:topic_0605 | The study and practice of information processing and use of computer informat... | Title: Informatics
| | edam:topic_0607 | edam:topic_0607 | Laboratory management and resources, for example, catalogues of biological re... | Title: Laboratory information management
| | edam:topic_0610 | edam:topic_0610 | The ecological and environmental sciences and especially the application of i... | Title: Ecology
| | edam:topic_0611 | edam:topic_0611 | The study of matter by studying the interference pattern from firing electron... | Title: Electron microscopy
| | edam:topic_0621 | edam:topic_0621 | A specific organism, or group of organisms, used to study a particular aspect... | Title: Model organisms
| | edam:topic_0622 | edam:topic_0622 | Whole genomes of one or more organisms, or genomes in general, such as meta-i... | Title: Genomics
| | edam:topic_0623 | edam:topic_0623 | Particular gene(s), gene family or other gene group or system and their encod... | Title: Gene and protein families
| | edam:topic_0625 | edam:topic_0625 | The study of genetic constitution of a living entity, such as an individual, ... | Title: Genotype and phenotype
| | edam:topic_0632 | edam:topic_0632 | Molecular probes (e | Title: Probes and primers
| | edam:topic_0634 | edam:topic_0634 | Diseases, including diseases in general and the genes, gene variations and pr... | Title: Pathology
| | edam:topic_0637 | edam:topic_0637 | Organism classification, identification and naming | Title: Taxonomy
| | edam:topic_0654 | edam:topic_0654 | DNA sequences and structure, including processes such as methylation and repl... | Title: DNA
| | edam:topic_0659 | edam:topic_0659 | Non-coding or functional RNA sequences, including regulatory RNA sequences, r... | Title: Functional, regulatory and non-coding RNA
| | edam:topic_0736 | edam:topic_0736 | Protein tertiary structural domains and folds in a protein or polypeptide cha... | Title: Protein folds and structural domains
| | edam:topic_0749 | edam:topic_0749 | Proteins that bind to DNA and control transcription of DNA to mRNA (transcrip... | Title: Transcription factors and regulatory sites
| | edam:topic_0769 | edam:topic_0769 | Biological or biomedical analytical workflows or pipelines | Title: Workflows
| | edam:topic_0780 | edam:topic_0780 | Plants, e | Title: Plant biology
| | edam:topic_0781 | edam:topic_0781 | Study of viruses, e | Title: Virology
| | edam:topic_0797 | edam:topic_0797 | The study (typically comparison) of the sequence, structure or function of mu... | Title: Comparative genomics
| | edam:topic_0798 | edam:topic_0798 | Mobile genetic elements, such as transposons, Plasmids, Bacteriophage element... | Title: Mobile genetic elements
| | edam:topic_0804 | edam:topic_0804 | The application of information technology to immunology such as immunological... | Title: Immunology
| | edam:topic_0820 | edam:topic_0820 | Lipoproteins (protein-lipid assemblies), and proteins or region of a protein ... | Title: Membrane and lipoproteins
| | edam:topic_0821 | edam:topic_0821 | Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed re... | Title: Enzymes
| | edam:topic_1317 | edam:topic_1317 | The molecular structure of biological molecules, particularly macromolecules ... | Title: Structural biology
| | edam:topic_1775 | edam:topic_1775 | The study of gene and protein function including the prediction of functional... | Title: Function analysis
| | edam:topic_2229 | edam:topic_2229 | Cells, such as key genes and proteins involved in the cell cycle | Title: Cell biology
| | edam:topic_2258 | edam:topic_2258 | The application of information technology to chemistry in biological research... | Title: Cheminformatics
| | edam:topic_2259 | edam:topic_2259 | The holistic modelling and analysis of complex biological systems and the int... | Title: Systems biology
| | edam:topic_2269 | edam:topic_2269 | The application of statistical methods to biological problems | Title: Statistics and probability
| | edam:topic_2275 | edam:topic_2275 | The construction, analysis, evaluation, refinement etc | Title: Molecular modelling
| | edam:topic_2533 | edam:topic_2533 | DNA mutation | Title: DNA mutation
| | edam:topic_2640 | edam:topic_2640 | The study of cancer, for example, genes and proteins implicated in cancer | Title: Oncology
| | edam:topic_2814 | edam:topic_2814 | Protein secondary or tertiary structural data and/or associated annotation | Title: Protein structure analysis
| | edam:topic_2815 | edam:topic_2815 | The study of human beings in general, including the human genome and proteome | Title: Human biology
| | edam:topic_2828 | edam:topic_2828 | The study of matter and their structure by means of the diffraction of X-rays... | Title: X-ray diffraction
| | edam:topic_2830 | edam:topic_2830 | Immunity-related proteins and their ligands | Title: Immunoproteins and antigens
| | edam:topic_2840 | edam:topic_2840 | Toxins and the adverse effects of these chemical substances on living organis... | Title: Toxicology
| | edam:topic_2885 | edam:topic_2885 | DNA polymorphism | Title: DNA polymorphism
| | edam:topic_3047 | edam:topic_3047 | The molecular basis of biological activity, particularly the macromolecules (... | Title: Molecular biology
| | edam:topic_3050 | edam:topic_3050 | The degree of variation of life forms within a given ecosystem, biome or an e... | Title: Biodiversity
| | edam:topic_3053 | edam:topic_3053 | The study of genes, genetic variation and heredity in living organisms | Title: Genetics
| | edam:topic_3055 | edam:topic_3055 | The genes and genetic mechanisms such as Mendelian inheritance that underly c... | Title: Quantitative genetics
| | edam:topic_3056 | edam:topic_3056 | The distribution of allele frequencies in a population of organisms and its c... | Title: Population genetics
| | edam:topic_3063 | edam:topic_3063 | The application of information technology to health, disease and biomedicine | Title: Medical informatics
| | edam:topic_3064 | edam:topic_3064 | How organisms grow and develop | Title: Developmental biology
| | edam:topic_3065 | edam:topic_3065 | The development of organisms between the one-cell stage (typically the zygote... | Title: Embryology
| | edam:topic_3067 | edam:topic_3067 | The form and function of the structures of living organisms | Title: Anatomy
| | edam:topic_3068 | edam:topic_3068 | The scientific literature, language processing, reference information, and do... | Title: Literature and language
| | edam:topic_3070 | edam:topic_3070 | The study of life and living organisms, including their morphology, biochemis... | Title: Biology
| | edam:topic_3071 | edam:topic_3071 | Data management comprises the practices and principles of taking care of data... | Title: Data management
| | edam:topic_3077 | edam:topic_3077 | The acquisition of data, typically measurements of physical systems using any... | Title: Data acquisition
| | edam:topic_3120 | edam:topic_3120 | Protein sequence variants produced e | Title: Protein variants
| | edam:topic_3125 | edam:topic_3125 | Nucleic acids binding to some other molecule | Title: DNA binding sites
| | edam:topic_3127 | edam:topic_3127 | DNA replication or recombination | Title: DNA replication and recombination
| | edam:topic_3168 | edam:topic_3168 | The determination of complete (typically nucleotide) sequences, including tho... | Title: Sequencing
| | edam:topic_3169 | edam:topic_3169 | The analysis of protein-DNA interactions where chromatin immunoprecipitation ... | Title: ChIP-seq
| | edam:topic_3170 | edam:topic_3170 | A topic concerning high-throughput sequencing of cDNA to measure the RNA cont... | Title: RNA-Seq
| | edam:topic_3172 | edam:topic_3172 | The systematic study of metabolites, the chemical processes they are involved... | Title: Metabolomics
| | edam:topic_3173 | edam:topic_3173 | The study of the epigenetic modifications of a whole cell, tissue, organism e... | Title: Epigenomics
| | edam:topic_3174 | edam:topic_3174 | The study of genetic material recovered from environmental samples, and assoc... | Title: Metagenomics
| | edam:topic_3175 | edam:topic_3175 | Variation in chromosome structure including microscopic and submicroscopic ty... | Title: Structural variation
| | edam:topic_3176 | edam:topic_3176 | DNA-histone complexes (chromatin), organisation of chromatin into nucleosomes... | Title: DNA packaging
| | edam:topic_3179 | edam:topic_3179 | Experimental techniques that combine chromatin immunoprecipitation ('ChIP') w... | Title: ChIP-on-chip
| | edam:topic_3277 | edam:topic_3277 | Biological samples and specimens | Title: Sample collections
| | edam:topic_3292 | edam:topic_3292 | Chemical substances and physico-chemical processes and that occur within livi... | Title: Biochemistry
| | edam:topic_3293 | edam:topic_3293 | The study of evolutionary relationships amongst organisms from analysis of ge... | Title: Phylogenetics
| | edam:topic_3295 | edam:topic_3295 | Topic concerning the study of heritable changes, for example in gene expressi... | Title: Epigenetics
| | edam:topic_3297 | edam:topic_3297 | The exploitation of biological process, structure and function for industrial... | Title: Biotechnology
| | edam:topic_3298 | edam:topic_3298 | Phenomes, or the study of the change in phenotype (the physical and biochemic... | Title: Phenomics
| | edam:topic_3299 | edam:topic_3299 | The evolutionary processes, from the genetic to environmental scale, that pro... | Title: Evolutionary biology
| | edam:topic_3300 | edam:topic_3300 | The functions of living organisms and their constituent parts | Title: Physiology
| | edam:topic_3301 | edam:topic_3301 | The biology of microorganisms | Title: Microbiology
| | edam:topic_3302 | edam:topic_3302 | The biology of parasites | Title: Parasitology
| | edam:topic_3303 | edam:topic_3303 | Research in support of healing by diagnosis, treatment, and prevention of dis... | Title: Medicine
| | edam:topic_3304 | edam:topic_3304 | The study of the nervous system and brain; its anatomy, physiology and functi... | Title: Neurobiology
| | edam:topic_3305 | edam:topic_3305 | Topic concerning the the patterns, cause, and effect of disease within popula... | Title: Public health and epidemiology
| | edam:topic_3306 | edam:topic_3306 | The use of physics to study biological system | Title: Biophysics
| | edam:topic_3307 | edam:topic_3307 | The development and application of theory, analytical methods, mathematical m... | Title: Computational biology
| | edam:topic_3308 | edam:topic_3308 | The analysis of transcriptomes, or a set of all the RNA molecules in a specif... | Title: Transcriptomics
| | edam:topic_3314 | edam:topic_3314 | The composition and properties of matter, reactions, and the use of reactions... | Title: Chemistry
| | edam:topic_3315 | edam:topic_3315 | The study of numbers (quantity) and other topics including structure, space, ... | Title: Mathematics
| | edam:topic_3316 | edam:topic_3316 | The theory and practical use of computer systems | Title: Computer science
| | edam:topic_3318 | edam:topic_3318 | The study of matter, space and time, and related concepts such as energy and ... | Title: Physics
| | edam:topic_3320 | edam:topic_3320 | RNA splicing; post-transcription RNA modification involving the removal of in... | Title: RNA splicing
| | edam:topic_3321 | edam:topic_3321 | The structure and function of genes at a molecular level | Title: Molecular genetics
| | edam:topic_3322 | edam:topic_3322 | The study of respiratory system | Title: Respiratory medicine
| | edam:topic_3324 | edam:topic_3324 | The branch of medicine that deals with the prevention, diagnosis and manageme... | Title: Infectious disease
| | edam:topic_3325 | edam:topic_3325 | The study of rare diseases | Title: Rare diseases
| | edam:topic_3332 | edam:topic_3332 | Topic concerning the development and application of theory, analytical method... | Title: Computational chemistry
| | edam:topic_3334 | edam:topic_3334 | The branch of medicine that deals with the anatomy, functions and disorders o... | Title: Neurology
| | edam:topic_3335 | edam:topic_3335 | The diseases and abnormalities of the heart and circulatory system | Title: Cardiology
| | edam:topic_3336 | edam:topic_3336 | The discovery and design of drugs or potential drug compounds | Title: Drug discovery
| | edam:topic_3337 | edam:topic_3337 | Repositories of biological samples, typically human, for basic biological and... | Title: Biobank
| | edam:topic_3338 | edam:topic_3338 | Laboratory study of mice, for example, phenotyping, and mutagenesis of mouse ... | Title: Mouse clinic
| | edam:topic_3339 | edam:topic_3339 | Collections of microbial cells including bacteria, yeasts and moulds | Title: Microbial collection
| | edam:topic_3340 | edam:topic_3340 | Collections of cells grown under laboratory conditions, specifically, cells f... | Title: Cell culture collection
| | edam:topic_3341 | edam:topic_3341 | Collections of DNA, including both collections of cloned molecules, and popul... | Title: Clone library
| | edam:topic_3342 | edam:topic_3342 | 'translating' the output of basic and biomedical research into better diagnos... | Title: Translational medicine
| | edam:topic_3343 | edam:topic_3343 | Collections of chemicals, typically for use in high-throughput screening expe... | Title: Compound libraries and screening
| | edam:topic_3344 | edam:topic_3344 | Topic concerning biological science that is (typically) performed in the cont... | Title: Biomedical science
| | edam:topic_3345 | edam:topic_3345 | Topic concerning the identity of biological entities, or reports on such enti... | Title: Data identity and mapping
| | edam:topic_3360 | edam:topic_3360 | Objective indicators of biological state often used to assess health, and det... | Title: Biomarkers
| | edam:topic_3365 | edam:topic_3365 | The development of policies, models and standards that cover data acquisition... | Title: Data architecture, analysis and design
| | edam:topic_3366 | edam:topic_3366 | The combination and integration of data from different sources, for example i... | Title: Data integration and warehousing
| | edam:topic_3368 | edam:topic_3368 | Any matter, surface or construct that interacts with a biological system | Title: Biomaterials
| | edam:topic_3369 | edam:topic_3369 | The use of synthetic chemistry to study and manipulate biological systems | Title: Chemical biology
| | edam:topic_3370 | edam:topic_3370 | The study of the separation, identification, and quantification of the chemic... | Title: Analytical chemistry
| | edam:topic_3371 | edam:topic_3371 | The use of chemistry to create new compounds | Title: Synthetic chemistry
| | edam:topic_3372 | edam:topic_3372 | The process that leads from an original formulation of a computing problem to... | Title: Software engineering
| | edam:topic_3373 | edam:topic_3373 | The process of bringing a new drug to market once a lead compounds has been i... | Title: Drug development
| | edam:topic_3374 | edam:topic_3374 | The process of formulating and administering a pharmaceutical compound to ach... | Title: Biotherapeutics
| | edam:topic_3375 | edam:topic_3375 | The study of how a drug interacts with the body | Title: Drug metabolism
| | edam:topic_3376 | edam:topic_3376 | The discovery, development and approval of medicines | Title: Medicines research and development
| | edam:topic_3377 | edam:topic_3377 | The safety (or lack) of drugs and other medical interventions | Title: Safety sciences
| | edam:topic_3378 | edam:topic_3378 | The detection, assessment, understanding and prevention of adverse effects of... | Title: Pharmacovigilance
| | edam:topic_3379 | edam:topic_3379 | The testing of new medicines, vaccines or procedures on animals (preclinical)... | Title: Preclinical and clinical studies
| | edam:topic_3382 | edam:topic_3382 | The visual representation of an object | Title: Imaging
| | edam:topic_3383 | edam:topic_3383 | The use of imaging techniques to understand biology | Title: Bioimaging
| | edam:topic_3384 | edam:topic_3384 | The use of imaging techniques for clinical purposes for medical research | Title: Medical imaging
| | edam:topic_3385 | edam:topic_3385 | The use of optical instruments to magnify the image of an object | Title: Light microscopy
| | edam:topic_3386 | edam:topic_3386 | The use of animals and alternatives in experimental research | Title: Laboratory animal science
| | edam:topic_3387 | edam:topic_3387 | The study of organisms in the ocean or brackish waters | Title: Marine biology
| | edam:topic_3388 | edam:topic_3388 | The identification of molecular and genetic causes of disease and the develop... | Title: Molecular medicine
| | edam:topic_3390 | edam:topic_3390 | The study of the effects of food components on the metabolism, health, perfor... | Title: Nutritional science
| | edam:topic_3391 | edam:topic_3391 | The collective characterisation and quantification of pools of biological mol... | Title: Omics
| | edam:topic_3393 | edam:topic_3393 | The processes that need to be in place to ensure the quality of products for ... | Title: Quality affairs
| | edam:topic_3394 | edam:topic_3394 | The protection of public health by controlling the safety and efficacy of pro... | Title: Regulatory affairs
| | edam:topic_3395 | edam:topic_3395 | Biomedical approaches to clinical interventions that involve the use of stem ... | Title: Regenerative medicine
| | edam:topic_3396 | edam:topic_3396 | An interdisciplinary field of study that looks at the dynamic systems of the ... | Title: Systems medicine
| | edam:topic_3397 | edam:topic_3397 | Topic concerning the branch of medicine that deals with the prevention, diagn... | Title: Veterinary medicine
| | edam:topic_3398 | edam:topic_3398 | The application of biological concepts and methods to the analytical and synt... | Title: Bioengineering
| | edam:topic_3399 | edam:topic_3399 | The branch of medicine dealing with the diagnosis, treatment and prevention o... | Title: Geriatric medicine
| | edam:topic_3400 | edam:topic_3400 | Health issues related to the immune system and their prevention, diagnosis an... | Title: Allergy, clinical immunology and immunotherapeutics
| | edam:topic_3401 | edam:topic_3401 | The prevention of pain and the evaluation, treatment and rehabilitation of pe... | Title: Pain medicine
| | edam:topic_3402 | edam:topic_3402 | Anaesthesia and anaesthetics | Title: Anaesthesiology
| | edam:topic_3403 | edam:topic_3403 | The multidisciplinary that cares for patients with acute, life-threatening il... | Title: Critical care medicine
| | edam:topic_3404 | edam:topic_3404 | The branch of medicine that deals with prevention, diagnosis and treatment of... | Title: Dermatology
| | edam:topic_3405 | edam:topic_3405 | The study, diagnosis, prevention and treatments of disorders of the oral cavi... | Title: Dentistry
| | edam:topic_3406 | edam:topic_3406 | The branch of medicine that deals with the prevention, diagnosis, and treatme... | Title: Ear, nose and throat medicine
| | edam:topic_3407 | edam:topic_3407 | The branch of medicine dealing with diseases of endocrine organs, hormone sys... | Title: Endocrinology and metabolism
| | edam:topic_3408 | edam:topic_3408 | The branch of medicine that deals with the blood, blood-forming organs and bl... | Title: Haematology
| | edam:topic_3409 | edam:topic_3409 | The branch of medicine that deals with disorders of the oesophagus, stomach, ... | Title: Gastroenterology
| | edam:topic_3410 | edam:topic_3410 | The study of the biological and physiological differences between males and f... | Title: Gender medicine
| | edam:topic_3411 | edam:topic_3411 | The branch of medicine that deals with the health of the female reproductive ... | Title: Gynaecology and obstetrics
| | edam:topic_3412 | edam:topic_3412 | The branch of medicine that deals with the liver, gallbladder, bile ducts and... | Title: Hepatic and biliary medicine
| | edam:topic_3414 | edam:topic_3414 | The branch of medicine that treats body wounds or shock produced by sudden ph... | Title: Trauma medicine
| | edam:topic_3415 | edam:topic_3415 | The branch of medicine that deals with the diagnosis, management and preventi... | Title: Medical toxicology
| | edam:topic_3416 | edam:topic_3416 | The branch of medicine that deals with the prevention, diagnosis, and treatme... | Title: Musculoskeletal medicine
| | edam:topic_3417 | edam:topic_3417 | The branch of medicine that deals with disorders of the eye, including eyelid... | Title: Ophthalmology
| | edam:topic_3418 | edam:topic_3418 | The branch of medicine that deals with the medical care of infants, children ... | Title: Paediatrics
| | edam:topic_3419 | edam:topic_3419 | The branch of medicine that deals with the management of mental illness, emot... | Title: Psychiatry
| | edam:topic_3420 | edam:topic_3420 | The health of the reproductive processes, functions and systems at all stages... | Title: Reproductive health
| | edam:topic_3421 | edam:topic_3421 | The use of operative, manual and instrumental techniques on a patient to inve... | Title: Surgery
| | edam:topic_3422 | edam:topic_3422 | The branches of medicine and physiology focussing on the function and disorde... | Title: Urology and nephrology
| | edam:topic_3423 | edam:topic_3423 | Medical therapies that fall beyond the scope of conventional medicine but may... | Title: Complementary medicine
| | edam:topic_3444 | edam:topic_3444 | Techniques that uses magnetic fields and radiowaves to form images, typically... | Title: MRI
| | edam:topic_3448 | edam:topic_3448 | The study of matter by studying the diffraction pattern from firing neutrons ... | Title: Neutron diffraction
| | edam:topic_3452 | edam:topic_3452 | Imaging in sections (sectioning), through the use of a wave-generating device... | Title: Tomography
| | edam:topic_3473 | edam:topic_3473 | The discovery of patterns in large data sets and the extraction and trasnsfor... | Title: Data mining
| | edam:topic_3474 | edam:topic_3474 | A topic concerning the application of artificial intelligence methods to algo... | Title: Machine learning
| | edam:topic_3489 | edam:topic_3489 | The general handling of data stored in digital archives such as databases, da... | Title: Database management
| | edam:topic_3500 | edam:topic_3500 | Animals, e | Title: Zoology
| | edam:topic_3510 | edam:topic_3510 | The biology, archival, detection, prediction and analysis of positional featu... | Title: Protein sites, features and motifs
| | edam:topic_3511 | edam:topic_3511 | The biology, archival, detection, prediction and analysis of positional featu... | Title: Nucleic acid sites, features and motifs
| | edam:topic_3512 | edam:topic_3512 | Transcription of DNA into RNA and features of a messenger RNA (mRNA) molecule... | Title: Gene transcripts
| | edam:topic_3516 | edam:topic_3516 | Genotype experiment including case control, population, and family studies | Title: Genotyping experiment
| | edam:topic_3517 | edam:topic_3517 | Genome-wide association study experiments | Title: GWAS study
| | edam:topic_3518 | edam:topic_3518 | Microarray experiments including conditions, protocol, sample:data relationsh... | Title: Microarray experiment
| | edam:topic_3519 | edam:topic_3519 | PCR experiments, e | Title: PCR experiment
| | edam:topic_3520 | edam:topic_3520 | Proteomics experiments | Title: Proteomics experiment
| | edam:topic_3523 | edam:topic_3523 | Experiment in which the expression of a specific gene is post-transcriptional... | Title: RNAi experiment
| | edam:topic_3524 | edam:topic_3524 | Biological computational model experiments (simulation), for example the mini... | Title: Simulation experiment
| | edam:topic_3534 | edam:topic_3534 | Binding sites in proteins, including cleavage sites (for a proteolytic enzyme... | Title: Protein binding sites
| | edam:topic_3538 | edam:topic_3538 | Disordered structure in a protein | Title: Protein disordered structure
| | edam:topic_3542 | edam:topic_3542 | Secondary structure (predicted or real) of a protein, including super-seconda... | Title: Protein secondary structure
| | edam:topic_3569 | edam:topic_3569 | The application of mathematics to specific problems in science, typically by ... | Title: Applied mathematics
| | edam:topic_3570 | edam:topic_3570 | The study of abstract mathematical concepts | Title: Pure mathematics
| | edam:topic_3571 | edam:topic_3571 | Data governance is the control of data entry and maintenance to ensure the da... | Title: Data governance
| | edam:topic_3572 | edam:topic_3572 | The quality, integrity, and cleaning up of data | Title: Data quality management
| | edam:topic_3573 | edam:topic_3573 | The study of organisms in freshwater ecosystems | Title: Freshwater biology
| | edam:topic_3574 | edam:topic_3574 | The study of inheritance in human beings | Title: Human genetics
| | edam:topic_3575 | edam:topic_3575 | Health problems that are prevalent in tropical and subtropical regions | Title: Tropical medicine
| | edam:topic_3576 | edam:topic_3576 | Biotechnology applied to the medical sciences and the development of medicine... | Title: Medical biotechnology
| | edam:topic_3577 | edam:topic_3577 | An approach to medicine whereby decisions, practices and are tailored to the ... | Title: Personalised medicine
| | edam:topic_3656 | edam:topic_3656 | Experimental techniques to purify a protein-DNA crosslinked complex | Title: Immunoprecipitation experiment
| | edam:topic_3673 | edam:topic_3673 | Laboratory technique to sequence the complete DNA sequence of an organism's g... | Title: Whole genome sequencing
| | edam:topic_3674 | edam:topic_3674 | Laboratory technique to sequence the methylated regions in DNA | Title: Methylated DNA immunoprecipitation
| | edam:topic_3676 | edam:topic_3676 | Laboratory technique to sequence all the protein-coding regions in a genome, ... | Title: Exome sequencing
| | edam:topic_3678 | edam:topic_3678 | The design of an experiment intended to test a hypothesis, and describe or ex... | Title: Experimental design and studies
| | edam:topic_3679 | edam:topic_3679 | The design of an experiment involving non-human animals | Title: Animal study
| | edam:topic_3697 | edam:topic_3697 | The ecology of microorganisms including their relationship with one another a... | Title: Microbial ecology
| | edam:topic_3794 | edam:topic_3794 | An antibody-based technique used to map in vivo RNA-protein interactions | Title: RNA immunoprecipitation
| | edam:topic_3796 | edam:topic_3796 | Large-scale study (typically comparison) of DNA sequences of populations | Title: Population genomics
| | edam:topic_3810 | edam:topic_3810 | Multidisciplinary study, research and development within the field of agricul... | Title: Agricultural science
| | edam:topic_3837 | edam:topic_3837 | Approach which samples, in parallel, all genes in all organisms present in a ... | Title: Metagenomic sequencing
| | edam:topic_3855 | edam:topic_3855 | Study of the environment, the interactions between its physical, chemical, an... | Title: Environmental sciences
| | edam:topic_3892 | edam:topic_3892 | The study and simulation of molecular conformations using a computational mod... | Title: Biomolecular simulation
| | edam:topic_3895 | edam:topic_3895 | The application of multi-disciplinary science and technology for the construc... | Title: Synthetic biology
| | edam:topic_3912 | edam:topic_3912 | The application of biotechnology to directly manipulate an organism's genes | Title: Genetic engineering
| | edam:topic_3922 | edam:topic_3922 | A field of biological research focused on the discovery and identification of... | Title: Proteogenomics
| | edam:topic_3923 | edam:topic_3923 | Laboratory experiment to identify the differences between a specific genome (... | Title: Genome resequencing
| | edam:topic_3930 | edam:topic_3930 | A biomedical field that bridges immunology and genetics, to study the genetic... | Title: Immunogenetics
| | edam:topic_3931 | edam:topic_3931 | Interdisciplinary science focused on extracting information from chemical sys... | Title: Chemometrics
| | edam:topic_3934 | edam:topic_3934 | Cytometry is the measurement of the characteristics of cells | Title: Cytometry
| | edam:topic_3939 | edam:topic_3939 | Biotechnology approach that seeks to optimize cellular genetic and regulatory... | Title: Metabolic engineering
| | edam:topic_3940 | edam:topic_3940 | Molecular biology methods used to analyze the spatial organization of chromat... | Title: Chromosome conformation capture
| | edam:topic_3941 | edam:topic_3941 | The study of microbe gene expression within natural environments (i | Title: Metatranscriptomics
| | edam:topic_3943 | edam:topic_3943 | The reconstruction and analysis of genomic information in extinct species | Title: Paleogenomics
| | edam:topic_3944 | edam:topic_3944 | The biological classification of organisms by categorizing them in groups ("c... | Title: Cladistics
| | edam:topic_3945 | edam:topic_3945 | The study of the process and mechanism of change of biomolecules such as DNA,... | Title: Molecular evolution
| | edam:topic_3948 | edam:topic_3948 | Immunoinformatics is the field of computational biology that deals with the s... | Title: Immunoinformatics
| | edam:topic_3954 | edam:topic_3954 | A diagnostic imaging technique based on the application of ultrasound | Title: Echography
| | edam:topic_3955 | edam:topic_3955 | Experimental approaches to determine the rates of metabolic reactions - the m... | Title: Fluxomics
| | edam:topic_3957 | edam:topic_3957 | An experiment for studying protein-protein interactions | Title: Protein interaction experiment
| | edam:topic_3958 | edam:topic_3958 | A DNA structural variation, specifically a duplication or deletion event, res... | Title: Copy number variation
| | edam:topic_3959 | edam:topic_3959 | The branch of genetics concerned with the relationships between chromosomes a... | Title: Cytogenetics
| | edam:topic_3966 | edam:topic_3966 | The design of vaccines to protect against a particular pathogen, including an... | Title: Vaccinology
| | edam:topic_3967 | edam:topic_3967 | The study of immune system as a whole, its regulation and response to pathoge... | Title: Immunomics
| | edam:topic_3974 | edam:topic_3974 | Epistasis can be defined as the ability of the genotype at one locus to super... | Title: Epistasis
| | edam:topic_4010 | edam:topic_4010 | Open science encompasses the practices of making scientific research transpar... | Title: Open science
| | edam:topic_4011 | edam:topic_4011 | Data rescue denotes digitalisation, formatting, archival, and publication of ... | Title: Data rescue
| | edam:topic_4012 | edam:topic_4012 | FAIR data is scientific data that meets the principles of being findable, acc... | Title: FAIR data
| | edam:topic_4013 | edam:topic_4013 | Microbial mechanisms for protecting microorganisms against antimicrobial agen... | Title: Antimicrobial resistance
| | edam:topic_4014 | edam:topic_4014 | The monitoring method for measuring electrical activity in the brain | Title: Electroencephalography
| | edam:topic_4016 | edam:topic_4016 | The monitoring method for measuring electrical activity in the heart | Title: Electrocardiography
| | edam:topic_4017 | edam:topic_4017 | A method for studying biomolecules and other structures at very low (cryogeni... | Title: Cryogenic electron microscopy
| | edam:topic_4019 | edam:topic_4019 | Biosciences, or life sciences, include fields of study related to life, livin... | Title: Biosciences
| | edam:topic_4020 | edam:topic_4020 | The carbon cycle is the biogeochemical pathway of carbon moving through the d... | Title: Carbon cycle
| | edam:topic_4021 | edam:topic_4021 | Multiomics concerns integration of data from multiple omics (e | Title: Multiomics
| | edam:topic_4027 | edam:topic_4027 | With ribosome profiling, ribosome-protected mRNA fragments are analyzed with ... | Title: Ribosome Profiling
| | edam:topic_4028 | edam:topic_4028 | Combined with NGS (Next Generation Sequencing) technologies, single-cell sequ... | Title: Single-cell sequencing
| | edam:topic_4029 | edam:topic_4029 | The study of mechanical waves in liquids, solids, and gases | Title: Acoustics
| | edam:topic_4030 | edam:topic_4030 | Interdisplinary study of behavior, precise control, and manipulation of low (... | Title: Microfluidics
| | edam:topic_4037 | edam:topic_4037 | Genomic imprinting is a gene regulation mechanism by which a subset of genes ... | Title: Genomic imprinting
| | edam:topic_4038 | edam:topic_4038 | Metabarcoding is the barcoding of (environmental) DNA or RNA to identify mult... | Title: Metabarcoding
| | edam:topic_4044 | edam:topic_4044 | Data protection is a topic concerning data that should be protected from disc... | Title: Data protection
| | edam:topic_4045 | edam:topic_4045 | Cybersecurity is a topic comprising the approaches and technologies that enab... | Title: Cybersecurity
| | edam:topic_4046 | edam:topic_4046 | Version control is a technology for consistent management, storing, and shari... | Title: Version control
| | edam:topic_4047 | edam:topic_4047 | Software management comprises the practices and principles of taking care of ... | Title: Software management
| | edam:topic_4051 | edam:topic_4051 | Chromatin immunoprecipitation-based exeperiment similar to ChIP-seq, with an ... | Title: ChIP-exo
| | edam:topic_4052 | edam:topic_4052 | High-throughput genomic and epigenomic technique that capture chromatin confo... | Title: Hi-C
| | edam:topic_4053 | edam:topic_4053 | Assay for Transposase-Accessible Chromatin with high throughput sequencing | Title: ATAC-seq
| | edam:topic_4054 | edam:topic_4054 | Experiment in which the expression of a given gene is knocked down by means o... | Title: miRNA silencing
| | edam:topic_4055 | edam:topic_4055 | Experiment in which the expression of a given gene is knocked down by means o... | Title: siRNA experiment
| | edam:topic_4056 | edam:topic_4056 | Long-read sequencing is a sequencing method that produces reads thousands to ... | Title: Long-read sequencing
| | edam:topic_4057 | edam:topic_4057 | Short-read sequencing is a high-throughput sequencing method that generates m... | Title: Short-read sequencing
| | edam:topic_4060 | edam:topic_4060 | Metaproteomics is the profiling of proteins in a sample that contains materia... | Title: Metaproteomics
| | edam:topic_4061 | edam:topic_4061 | Bisulfite sequencing is a sequencing technique used to determine DNA methylat... | Title: Bisulfite sequencing
| | edam:topic_4062 | edam:topic_4062 | Bulk RNA barcoding and sequencing (BRB-seq) is a highly mutliplexed bulk RNA-... | Title: Bulk RNA barcoding and sequencing
| | edam:topic_4063 | edam:topic_4063 | DNase sequencing is a technique used to identify regions of open chromatin by... | Title: DNase sequencing
| | edam:topic_4064 | edam:topic_4064 | Specific sequencing of small RNAs using a variant of RNA-seq, with an additio... | Title: MicroRNA sequencing
| | edam:topic_4065 | edam:topic_4065 | Exposomics is the systematic and comprehensive study of the exposome and the ... | Title: Exposomics
| ## Identifier and Mapping Information ### Schema Source * from schema: https://includedcc.org/include-access-model ## LinkML Source
| | edam:topic_0078 | edam:topic_0078 | Archival, processing and analysis of protein data, typically molecular sequen... | Title: Proteins
| | edam:topic_0080 | edam:topic_0080 | The archival, processing and analysis of molecular sequences (monomer composi... | Title: Sequence analysis
| | edam:topic_0081 | edam:topic_0081 | The curation, processing, analysis and prediction of data about the structure... | Title: Structure analysis
| | edam:topic_0082 | edam:topic_0082 | The prediction of molecular structure, including the prediction, modelling, r... | Title: Structure prediction
| | edam:topic_0084 | edam:topic_0084 | The study of evolutionary relationships amongst organisms | Title: Phylogeny
| | edam:topic_0085 | edam:topic_0085 | The study of gene or protein functions and their interactions in totality in ... | Title: Functional genomics
| | edam:topic_0089 | edam:topic_0089 | The conceptualisation, categorisation and nomenclature (naming) of entities o... | Title: Ontology and terminology
| | edam:topic_0091 | edam:topic_0091 | The archival, curation, processing and analysis of complex biological data | Title: Bioinformatics
| | edam:topic_0092 | edam:topic_0092 | Rendering (drawing on a computer screen) or visualisation of molecular sequen... | Title: Data visualisation
| | edam:topic_0097 | edam:topic_0097 | The archival, curation, processing and analysis of nucleic acid structural in... | Title: Nucleic acid structure analysis
| | edam:topic_0099 | edam:topic_0099 | RNA sequences and structures | Title: RNA
| | edam:topic_0102 | edam:topic_0102 | The mapping of complete (typically nucleotide) sequences | Title: Mapping
| | edam:topic_0108 | edam:topic_0108 | The translation of mRNA into protein and subsequent protein processing in the... | Title: Protein expression
| | edam:topic_0114 | edam:topic_0114 | Gene structure, regions which make an RNA product and features such as promot... | Title: Gene structure
| | edam:topic_0121 | edam:topic_0121 | Proteomics is in the narrow sense (sensu stricto) the application of methods ... | Title: Proteomics
| | edam:topic_0122 | edam:topic_0122 | The elucidation of the three dimensional structure for all (available) protei... | Title: Structural genomics
| | edam:topic_0123 | edam:topic_0123 | The study of the physical and biochemical properties of peptides and proteins... | Title: Protein properties
| | edam:topic_0128 | edam:topic_0128 | Protein-protein, protein-DNA/RNA and protein-ligand interactions, including a... | Title: Protein interactions
| | edam:topic_0130 | edam:topic_0130 | Protein stability, folding (in 3D space) and protein sequence-structure-funct... | Title: Protein folding, stability and design
| | edam:topic_0140 | edam:topic_0140 | The study of how proteins are transported within and without the cell, includ... | Title: Protein targeting and localisation
| | edam:topic_0152 | edam:topic_0152 | Carbohydrates, typically including structural information | Title: Carbohydrates
| | edam:topic_0153 | edam:topic_0153 | Lipids and their structures | Title: Lipidomics
| | edam:topic_0154 | edam:topic_0154 | Small molecules of biological significance, typically archival, curation, pro... | Title: Small molecules
| | edam:topic_0157 | edam:topic_0157 | The archival, processing and analysis of the basic character composition of m... | Title: Sequence composition, complexity and repeats
| | edam:topic_0160 | edam:topic_0160 | The archival, detection, prediction and analysis of positional features such ... | Title: Sequence sites, features and motifs
| | edam:topic_0166 | edam:topic_0166 | Structural features or common 3D motifs within protein structures, including ... | Title: Protein structural motifs and surfaces
| | edam:topic_0176 | edam:topic_0176 | The study and simulation of molecular (typically protein) conformation using ... | Title: Molecular dynamics
| | edam:topic_0194 | edam:topic_0194 | The integrated study of evolutionary relationships and whole genome data, for... | Title: Phylogenomics
| | edam:topic_0196 | edam:topic_0196 | The assembly of fragments of a DNA sequence to reconstruct the original seque... | Title: Sequence assembly
| | edam:topic_0199 | edam:topic_0199 | Stable, naturally occurring mutations in a nucleotide sequence including alle... | Title: Genetic variation
| | edam:topic_0202 | edam:topic_0202 | The study of drugs and their effects or responses in living systems | Title: Pharmacology
| | edam:topic_0203 | edam:topic_0203 | The analysis of levels and patterns of synthesis of gene products (proteins a... | Title: Gene expression
| | edam:topic_0204 | edam:topic_0204 | The regulation of gene expression | Title: Gene regulation
| | edam:topic_0208 | edam:topic_0208 | The influence of genotype on drug response, for example by correlating gene e... | Title: Pharmacogenomics
| | edam:topic_0209 | edam:topic_0209 | The design and chemical synthesis of bioactive molecules, for example drugs o... | Title: Medicinal chemistry
| | edam:topic_0218 | edam:topic_0218 | The processing and analysis of natural language, such as scientific literatur... | Title: Natural language processing
| | edam:topic_0219 | edam:topic_0219 | Data curation and archival includes the preservation of data in a repository,... | Title: Data curation and archival
| | edam:topic_0593 | edam:topic_0593 | An analytical technique that exploits the magenetic properties of certain ato... | Title: NMR
| | edam:topic_0601 | edam:topic_0601 | Protein chemical modifications, e | Title: Protein modifications
| | edam:topic_0602 | edam:topic_0602 | Molecular interactions, biological pathways, networks and other models | Title: Molecular interactions, pathways and networks
| | edam:topic_0605 | edam:topic_0605 | The study and practice of information processing and use of computer informat... | Title: Informatics
| | edam:topic_0607 | edam:topic_0607 | Laboratory management and resources, for example, catalogues of biological re... | Title: Laboratory information management
| | edam:topic_0610 | edam:topic_0610 | The ecological and environmental sciences and especially the application of i... | Title: Ecology
| | edam:topic_0611 | edam:topic_0611 | The study of matter by studying the interference pattern from firing electron... | Title: Electron microscopy
| | edam:topic_0621 | edam:topic_0621 | A specific organism, or group of organisms, used to study a particular aspect... | Title: Model organisms
| | edam:topic_0622 | edam:topic_0622 | Whole genomes of one or more organisms, or genomes in general, such as meta-i... | Title: Genomics
| | edam:topic_0623 | edam:topic_0623 | Particular gene(s), gene family or other gene group or system and their encod... | Title: Gene and protein families
| | edam:topic_0625 | edam:topic_0625 | The study of genetic constitution of a living entity, such as an individual, ... | Title: Genotype and phenotype
| | edam:topic_0632 | edam:topic_0632 | Molecular probes (e | Title: Probes and primers
| | edam:topic_0634 | edam:topic_0634 | Diseases, including diseases in general and the genes, gene variations and pr... | Title: Pathology
| | edam:topic_0637 | edam:topic_0637 | Organism classification, identification and naming | Title: Taxonomy
| | edam:topic_0654 | edam:topic_0654 | DNA sequences and structure, including processes such as methylation and repl... | Title: DNA
| | edam:topic_0659 | edam:topic_0659 | Non-coding or functional RNA sequences, including regulatory RNA sequences, r... | Title: Functional, regulatory and non-coding RNA
| | edam:topic_0736 | edam:topic_0736 | Protein tertiary structural domains and folds in a protein or polypeptide cha... | Title: Protein folds and structural domains
| | edam:topic_0749 | edam:topic_0749 | Proteins that bind to DNA and control transcription of DNA to mRNA (transcrip... | Title: Transcription factors and regulatory sites
| | edam:topic_0769 | edam:topic_0769 | Biological or biomedical analytical workflows or pipelines | Title: Workflows
| | edam:topic_0780 | edam:topic_0780 | Plants, e | Title: Plant biology
| | edam:topic_0781 | edam:topic_0781 | Study of viruses, e | Title: Virology
| | edam:topic_0797 | edam:topic_0797 | The study (typically comparison) of the sequence, structure or function of mu... | Title: Comparative genomics
| | edam:topic_0798 | edam:topic_0798 | Mobile genetic elements, such as transposons, Plasmids, Bacteriophage element... | Title: Mobile genetic elements
| | edam:topic_0804 | edam:topic_0804 | The application of information technology to immunology such as immunological... | Title: Immunology
| | edam:topic_0820 | edam:topic_0820 | Lipoproteins (protein-lipid assemblies), and proteins or region of a protein ... | Title: Membrane and lipoproteins
| | edam:topic_0821 | edam:topic_0821 | Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed re... | Title: Enzymes
| | edam:topic_1317 | edam:topic_1317 | The molecular structure of biological molecules, particularly macromolecules ... | Title: Structural biology
| | edam:topic_1775 | edam:topic_1775 | The study of gene and protein function including the prediction of functional... | Title: Function analysis
| | edam:topic_2229 | edam:topic_2229 | Cells, such as key genes and proteins involved in the cell cycle | Title: Cell biology
| | edam:topic_2258 | edam:topic_2258 | The application of information technology to chemistry in biological research... | Title: Cheminformatics
| | edam:topic_2259 | edam:topic_2259 | The holistic modelling and analysis of complex biological systems and the int... | Title: Systems biology
| | edam:topic_2269 | edam:topic_2269 | The application of statistical methods to biological problems | Title: Statistics and probability
| | edam:topic_2275 | edam:topic_2275 | The construction, analysis, evaluation, refinement etc | Title: Molecular modelling
| | edam:topic_2533 | edam:topic_2533 | DNA mutation | Title: DNA mutation
| | edam:topic_2640 | edam:topic_2640 | The study of cancer, for example, genes and proteins implicated in cancer | Title: Oncology
| | edam:topic_2814 | edam:topic_2814 | Protein secondary or tertiary structural data and/or associated annotation | Title: Protein structure analysis
| | edam:topic_2815 | edam:topic_2815 | The study of human beings in general, including the human genome and proteome | Title: Human biology
| | edam:topic_2828 | edam:topic_2828 | The study of matter and their structure by means of the diffraction of X-rays... | Title: X-ray diffraction
| | edam:topic_2830 | edam:topic_2830 | Immunity-related proteins and their ligands | Title: Immunoproteins and antigens
| | edam:topic_2840 | edam:topic_2840 | Toxins and the adverse effects of these chemical substances on living organis... | Title: Toxicology
| | edam:topic_2885 | edam:topic_2885 | DNA polymorphism | Title: DNA polymorphism
| | edam:topic_3047 | edam:topic_3047 | The molecular basis of biological activity, particularly the macromolecules (... | Title: Molecular biology
| | edam:topic_3050 | edam:topic_3050 | The degree of variation of life forms within a given ecosystem, biome or an e... | Title: Biodiversity
| | edam:topic_3053 | edam:topic_3053 | The study of genes, genetic variation and heredity in living organisms | Title: Genetics
| | edam:topic_3055 | edam:topic_3055 | The genes and genetic mechanisms such as Mendelian inheritance that underly c... | Title: Quantitative genetics
| | edam:topic_3056 | edam:topic_3056 | The distribution of allele frequencies in a population of organisms and its c... | Title: Population genetics
| | edam:topic_3063 | edam:topic_3063 | The application of information technology to health, disease and biomedicine | Title: Medical informatics
| | edam:topic_3064 | edam:topic_3064 | How organisms grow and develop | Title: Developmental biology
| | edam:topic_3065 | edam:topic_3065 | The development of organisms between the one-cell stage (typically the zygote... | Title: Embryology
| | edam:topic_3067 | edam:topic_3067 | The form and function of the structures of living organisms | Title: Anatomy
| | edam:topic_3068 | edam:topic_3068 | The scientific literature, language processing, reference information, and do... | Title: Literature and language
| | edam:topic_3070 | edam:topic_3070 | The study of life and living organisms, including their morphology, biochemis... | Title: Biology
| | edam:topic_3071 | edam:topic_3071 | Data management comprises the practices and principles of taking care of data... | Title: Data management
| | edam:topic_3077 | edam:topic_3077 | The acquisition of data, typically measurements of physical systems using any... | Title: Data acquisition
| | edam:topic_3120 | edam:topic_3120 | Protein sequence variants produced e | Title: Protein variants
| | edam:topic_3125 | edam:topic_3125 | Nucleic acids binding to some other molecule | Title: DNA binding sites
| | edam:topic_3127 | edam:topic_3127 | DNA replication or recombination | Title: DNA replication and recombination
| | edam:topic_3168 | edam:topic_3168 | The determination of complete (typically nucleotide) sequences, including tho... | Title: Sequencing
| | edam:topic_3169 | edam:topic_3169 | The analysis of protein-DNA interactions where chromatin immunoprecipitation ... | Title: ChIP-seq
| | edam:topic_3170 | edam:topic_3170 | A topic concerning high-throughput sequencing of cDNA to measure the RNA cont... | Title: RNA-Seq
| | edam:topic_3172 | edam:topic_3172 | The systematic study of metabolites, the chemical processes they are involved... | Title: Metabolomics
| | edam:topic_3173 | edam:topic_3173 | The study of the epigenetic modifications of a whole cell, tissue, organism e... | Title: Epigenomics
| | edam:topic_3174 | edam:topic_3174 | The study of genetic material recovered from environmental samples, and assoc... | Title: Metagenomics
| | edam:topic_3175 | edam:topic_3175 | Variation in chromosome structure including microscopic and submicroscopic ty... | Title: Structural variation
| | edam:topic_3176 | edam:topic_3176 | DNA-histone complexes (chromatin), organisation of chromatin into nucleosomes... | Title: DNA packaging
| | edam:topic_3179 | edam:topic_3179 | Experimental techniques that combine chromatin immunoprecipitation ('ChIP') w... | Title: ChIP-on-chip
| | edam:topic_3277 | edam:topic_3277 | Biological samples and specimens | Title: Sample collections
| | edam:topic_3292 | edam:topic_3292 | Chemical substances and physico-chemical processes and that occur within livi... | Title: Biochemistry
| | edam:topic_3293 | edam:topic_3293 | The study of evolutionary relationships amongst organisms from analysis of ge... | Title: Phylogenetics
| | edam:topic_3295 | edam:topic_3295 | Topic concerning the study of heritable changes, for example in gene expressi... | Title: Epigenetics
| | edam:topic_3297 | edam:topic_3297 | The exploitation of biological process, structure and function for industrial... | Title: Biotechnology
| | edam:topic_3298 | edam:topic_3298 | Phenomes, or the study of the change in phenotype (the physical and biochemic... | Title: Phenomics
| | edam:topic_3299 | edam:topic_3299 | The evolutionary processes, from the genetic to environmental scale, that pro... | Title: Evolutionary biology
| | edam:topic_3300 | edam:topic_3300 | The functions of living organisms and their constituent parts | Title: Physiology
| | edam:topic_3301 | edam:topic_3301 | The biology of microorganisms | Title: Microbiology
| | edam:topic_3302 | edam:topic_3302 | The biology of parasites | Title: Parasitology
| | edam:topic_3303 | edam:topic_3303 | Research in support of healing by diagnosis, treatment, and prevention of dis... | Title: Medicine
| | edam:topic_3304 | edam:topic_3304 | The study of the nervous system and brain; its anatomy, physiology and functi... | Title: Neurobiology
| | edam:topic_3305 | edam:topic_3305 | Topic concerning the the patterns, cause, and effect of disease within popula... | Title: Public health and epidemiology
| | edam:topic_3306 | edam:topic_3306 | The use of physics to study biological system | Title: Biophysics
| | edam:topic_3307 | edam:topic_3307 | The development and application of theory, analytical methods, mathematical m... | Title: Computational biology
| | edam:topic_3308 | edam:topic_3308 | The analysis of transcriptomes, or a set of all the RNA molecules in a specif... | Title: Transcriptomics
| | edam:topic_3314 | edam:topic_3314 | The composition and properties of matter, reactions, and the use of reactions... | Title: Chemistry
| | edam:topic_3315 | edam:topic_3315 | The study of numbers (quantity) and other topics including structure, space, ... | Title: Mathematics
| | edam:topic_3316 | edam:topic_3316 | The theory and practical use of computer systems | Title: Computer science
| | edam:topic_3318 | edam:topic_3318 | The study of matter, space and time, and related concepts such as energy and ... | Title: Physics
| | edam:topic_3320 | edam:topic_3320 | RNA splicing; post-transcription RNA modification involving the removal of in... | Title: RNA splicing
| | edam:topic_3321 | edam:topic_3321 | The structure and function of genes at a molecular level | Title: Molecular genetics
| | edam:topic_3322 | edam:topic_3322 | The study of respiratory system | Title: Respiratory medicine
| | edam:topic_3324 | edam:topic_3324 | The branch of medicine that deals with the prevention, diagnosis and manageme... | Title: Infectious disease
| | edam:topic_3325 | edam:topic_3325 | The study of rare diseases | Title: Rare diseases
| | edam:topic_3332 | edam:topic_3332 | Topic concerning the development and application of theory, analytical method... | Title: Computational chemistry
| | edam:topic_3334 | edam:topic_3334 | The branch of medicine that deals with the anatomy, functions and disorders o... | Title: Neurology
| | edam:topic_3335 | edam:topic_3335 | The diseases and abnormalities of the heart and circulatory system | Title: Cardiology
| | edam:topic_3336 | edam:topic_3336 | The discovery and design of drugs or potential drug compounds | Title: Drug discovery
| | edam:topic_3337 | edam:topic_3337 | Repositories of biological samples, typically human, for basic biological and... | Title: Biobank
| | edam:topic_3338 | edam:topic_3338 | Laboratory study of mice, for example, phenotyping, and mutagenesis of mouse ... | Title: Mouse clinic
| | edam:topic_3339 | edam:topic_3339 | Collections of microbial cells including bacteria, yeasts and moulds | Title: Microbial collection
| | edam:topic_3340 | edam:topic_3340 | Collections of cells grown under laboratory conditions, specifically, cells f... | Title: Cell culture collection
| | edam:topic_3341 | edam:topic_3341 | Collections of DNA, including both collections of cloned molecules, and popul... | Title: Clone library
| | edam:topic_3342 | edam:topic_3342 | 'translating' the output of basic and biomedical research into better diagnos... | Title: Translational medicine
| | edam:topic_3343 | edam:topic_3343 | Collections of chemicals, typically for use in high-throughput screening expe... | Title: Compound libraries and screening
| | edam:topic_3344 | edam:topic_3344 | Topic concerning biological science that is (typically) performed in the cont... | Title: Biomedical science
| | edam:topic_3345 | edam:topic_3345 | Topic concerning the identity of biological entities, or reports on such enti... | Title: Data identity and mapping
| | edam:topic_3360 | edam:topic_3360 | Objective indicators of biological state often used to assess health, and det... | Title: Biomarkers
| | edam:topic_3365 | edam:topic_3365 | The development of policies, models and standards that cover data acquisition... | Title: Data architecture, analysis and design
| | edam:topic_3366 | edam:topic_3366 | The combination and integration of data from different sources, for example i... | Title: Data integration and warehousing
| | edam:topic_3368 | edam:topic_3368 | Any matter, surface or construct that interacts with a biological system | Title: Biomaterials
| | edam:topic_3369 | edam:topic_3369 | The use of synthetic chemistry to study and manipulate biological systems | Title: Chemical biology
| | edam:topic_3370 | edam:topic_3370 | The study of the separation, identification, and quantification of the chemic... | Title: Analytical chemistry
| | edam:topic_3371 | edam:topic_3371 | The use of chemistry to create new compounds | Title: Synthetic chemistry
| | edam:topic_3372 | edam:topic_3372 | The process that leads from an original formulation of a computing problem to... | Title: Software engineering
| | edam:topic_3373 | edam:topic_3373 | The process of bringing a new drug to market once a lead compounds has been i... | Title: Drug development
| | edam:topic_3374 | edam:topic_3374 | The process of formulating and administering a pharmaceutical compound to ach... | Title: Biotherapeutics
| | edam:topic_3375 | edam:topic_3375 | The study of how a drug interacts with the body | Title: Drug metabolism
| | edam:topic_3376 | edam:topic_3376 | The discovery, development and approval of medicines | Title: Medicines research and development
| | edam:topic_3377 | edam:topic_3377 | The safety (or lack) of drugs and other medical interventions | Title: Safety sciences
| | edam:topic_3378 | edam:topic_3378 | The detection, assessment, understanding and prevention of adverse effects of... | Title: Pharmacovigilance
| | edam:topic_3379 | edam:topic_3379 | The testing of new medicines, vaccines or procedures on animals (preclinical)... | Title: Preclinical and clinical studies
| | edam:topic_3382 | edam:topic_3382 | The visual representation of an object | Title: Imaging
| | edam:topic_3383 | edam:topic_3383 | The use of imaging techniques to understand biology | Title: Bioimaging
| | edam:topic_3384 | edam:topic_3384 | The use of imaging techniques for clinical purposes for medical research | Title: Medical imaging
| | edam:topic_3385 | edam:topic_3385 | The use of optical instruments to magnify the image of an object | Title: Light microscopy
| | edam:topic_3386 | edam:topic_3386 | The use of animals and alternatives in experimental research | Title: Laboratory animal science
| | edam:topic_3387 | edam:topic_3387 | The study of organisms in the ocean or brackish waters | Title: Marine biology
| | edam:topic_3388 | edam:topic_3388 | The identification of molecular and genetic causes of disease and the develop... | Title: Molecular medicine
| | edam:topic_3390 | edam:topic_3390 | The study of the effects of food components on the metabolism, health, perfor... | Title: Nutritional science
| | edam:topic_3391 | edam:topic_3391 | The collective characterisation and quantification of pools of biological mol... | Title: Omics
| | edam:topic_3393 | edam:topic_3393 | The processes that need to be in place to ensure the quality of products for ... | Title: Quality affairs
| | edam:topic_3394 | edam:topic_3394 | The protection of public health by controlling the safety and efficacy of pro... | Title: Regulatory affairs
| | edam:topic_3395 | edam:topic_3395 | Biomedical approaches to clinical interventions that involve the use of stem ... | Title: Regenerative medicine
| | edam:topic_3396 | edam:topic_3396 | An interdisciplinary field of study that looks at the dynamic systems of the ... | Title: Systems medicine
| | edam:topic_3397 | edam:topic_3397 | Topic concerning the branch of medicine that deals with the prevention, diagn... | Title: Veterinary medicine
| | edam:topic_3398 | edam:topic_3398 | The application of biological concepts and methods to the analytical and synt... | Title: Bioengineering
| | edam:topic_3399 | edam:topic_3399 | The branch of medicine dealing with the diagnosis, treatment and prevention o... | Title: Geriatric medicine
| | edam:topic_3400 | edam:topic_3400 | Health issues related to the immune system and their prevention, diagnosis an... | Title: Allergy, clinical immunology and immunotherapeutics
| | edam:topic_3401 | edam:topic_3401 | The prevention of pain and the evaluation, treatment and rehabilitation of pe... | Title: Pain medicine
| | edam:topic_3402 | edam:topic_3402 | Anaesthesia and anaesthetics | Title: Anaesthesiology
| | edam:topic_3403 | edam:topic_3403 | The multidisciplinary that cares for patients with acute, life-threatening il... | Title: Critical care medicine
| | edam:topic_3404 | edam:topic_3404 | The branch of medicine that deals with prevention, diagnosis and treatment of... | Title: Dermatology
| | edam:topic_3405 | edam:topic_3405 | The study, diagnosis, prevention and treatments of disorders of the oral cavi... | Title: Dentistry
| | edam:topic_3406 | edam:topic_3406 | The branch of medicine that deals with the prevention, diagnosis, and treatme... | Title: Ear, nose and throat medicine
| | edam:topic_3407 | edam:topic_3407 | The branch of medicine dealing with diseases of endocrine organs, hormone sys... | Title: Endocrinology and metabolism
| | edam:topic_3408 | edam:topic_3408 | The branch of medicine that deals with the blood, blood-forming organs and bl... | Title: Haematology
| | edam:topic_3409 | edam:topic_3409 | The branch of medicine that deals with disorders of the oesophagus, stomach, ... | Title: Gastroenterology
| | edam:topic_3410 | edam:topic_3410 | The study of the biological and physiological differences between males and f... | Title: Gender medicine
| | edam:topic_3411 | edam:topic_3411 | The branch of medicine that deals with the health of the female reproductive ... | Title: Gynaecology and obstetrics
| | edam:topic_3412 | edam:topic_3412 | The branch of medicine that deals with the liver, gallbladder, bile ducts and... | Title: Hepatic and biliary medicine
| | edam:topic_3414 | edam:topic_3414 | The branch of medicine that treats body wounds or shock produced by sudden ph... | Title: Trauma medicine
| | edam:topic_3415 | edam:topic_3415 | The branch of medicine that deals with the diagnosis, management and preventi... | Title: Medical toxicology
| | edam:topic_3416 | edam:topic_3416 | The branch of medicine that deals with the prevention, diagnosis, and treatme... | Title: Musculoskeletal medicine
| | edam:topic_3417 | edam:topic_3417 | The branch of medicine that deals with disorders of the eye, including eyelid... | Title: Ophthalmology
| | edam:topic_3418 | edam:topic_3418 | The branch of medicine that deals with the medical care of infants, children ... | Title: Paediatrics
| | edam:topic_3419 | edam:topic_3419 | The branch of medicine that deals with the management of mental illness, emot... | Title: Psychiatry
| | edam:topic_3420 | edam:topic_3420 | The health of the reproductive processes, functions and systems at all stages... | Title: Reproductive health
| | edam:topic_3421 | edam:topic_3421 | The use of operative, manual and instrumental techniques on a patient to inve... | Title: Surgery
| | edam:topic_3422 | edam:topic_3422 | The branches of medicine and physiology focussing on the function and disorde... | Title: Urology and nephrology
| | edam:topic_3423 | edam:topic_3423 | Medical therapies that fall beyond the scope of conventional medicine but may... | Title: Complementary medicine
| | edam:topic_3444 | edam:topic_3444 | Techniques that uses magnetic fields and radiowaves to form images, typically... | Title: MRI
| | edam:topic_3448 | edam:topic_3448 | The study of matter by studying the diffraction pattern from firing neutrons ... | Title: Neutron diffraction
| | edam:topic_3452 | edam:topic_3452 | Imaging in sections (sectioning), through the use of a wave-generating device... | Title: Tomography
| | edam:topic_3473 | edam:topic_3473 | The discovery of patterns in large data sets and the extraction and trasnsfor... | Title: Data mining
| | edam:topic_3474 | edam:topic_3474 | A topic concerning the application of artificial intelligence methods to algo... | Title: Machine learning
| | edam:topic_3489 | edam:topic_3489 | The general handling of data stored in digital archives such as databases, da... | Title: Database management
| | edam:topic_3500 | edam:topic_3500 | Animals, e | Title: Zoology
| | edam:topic_3510 | edam:topic_3510 | The biology, archival, detection, prediction and analysis of positional featu... | Title: Protein sites, features and motifs
| | edam:topic_3511 | edam:topic_3511 | The biology, archival, detection, prediction and analysis of positional featu... | Title: Nucleic acid sites, features and motifs
| | edam:topic_3512 | edam:topic_3512 | Transcription of DNA into RNA and features of a messenger RNA (mRNA) molecule... | Title: Gene transcripts
| | edam:topic_3516 | edam:topic_3516 | Genotype experiment including case control, population, and family studies | Title: Genotyping experiment
| | edam:topic_3517 | edam:topic_3517 | Genome-wide association study experiments | Title: GWAS study
| | edam:topic_3518 | edam:topic_3518 | Microarray experiments including conditions, protocol, sample:data relationsh... | Title: Microarray experiment
| | edam:topic_3519 | edam:topic_3519 | PCR experiments, e | Title: PCR experiment
| | edam:topic_3520 | edam:topic_3520 | Proteomics experiments | Title: Proteomics experiment
| | edam:topic_3523 | edam:topic_3523 | Experiment in which the expression of a specific gene is post-transcriptional... | Title: RNAi experiment
| | edam:topic_3524 | edam:topic_3524 | Biological computational model experiments (simulation), for example the mini... | Title: Simulation experiment
| | edam:topic_3534 | edam:topic_3534 | Binding sites in proteins, including cleavage sites (for a proteolytic enzyme... | Title: Protein binding sites
| | edam:topic_3538 | edam:topic_3538 | Disordered structure in a protein | Title: Protein disordered structure
| | edam:topic_3542 | edam:topic_3542 | Secondary structure (predicted or real) of a protein, including super-seconda... | Title: Protein secondary structure
| | edam:topic_3569 | edam:topic_3569 | The application of mathematics to specific problems in science, typically by ... | Title: Applied mathematics
| | edam:topic_3570 | edam:topic_3570 | The study of abstract mathematical concepts | Title: Pure mathematics
| | edam:topic_3571 | edam:topic_3571 | Data governance is the control of data entry and maintenance to ensure the da... | Title: Data governance
| | edam:topic_3572 | edam:topic_3572 | The quality, integrity, and cleaning up of data | Title: Data quality management
| | edam:topic_3573 | edam:topic_3573 | The study of organisms in freshwater ecosystems | Title: Freshwater biology
| | edam:topic_3574 | edam:topic_3574 | The study of inheritance in human beings | Title: Human genetics
| | edam:topic_3575 | edam:topic_3575 | Health problems that are prevalent in tropical and subtropical regions | Title: Tropical medicine
| | edam:topic_3576 | edam:topic_3576 | Biotechnology applied to the medical sciences and the development of medicine... | Title: Medical biotechnology
| | edam:topic_3577 | edam:topic_3577 | An approach to medicine whereby decisions, practices and are tailored to the ... | Title: Personalised medicine
| | edam:topic_3656 | edam:topic_3656 | Experimental techniques to purify a protein-DNA crosslinked complex | Title: Immunoprecipitation experiment
| | edam:topic_3673 | edam:topic_3673 | Laboratory technique to sequence the complete DNA sequence of an organism's g... | Title: Whole genome sequencing
| | edam:topic_3674 | edam:topic_3674 | Laboratory technique to sequence the methylated regions in DNA | Title: Methylated DNA immunoprecipitation
| | edam:topic_3676 | edam:topic_3676 | Laboratory technique to sequence all the protein-coding regions in a genome, ... | Title: Exome sequencing
| | edam:topic_3678 | edam:topic_3678 | The design of an experiment intended to test a hypothesis, and describe or ex... | Title: Experimental design and studies
| | edam:topic_3679 | edam:topic_3679 | The design of an experiment involving non-human animals | Title: Animal study
| | edam:topic_3697 | edam:topic_3697 | The ecology of microorganisms including their relationship with one another a... | Title: Microbial ecology
| | edam:topic_3794 | edam:topic_3794 | An antibody-based technique used to map in vivo RNA-protein interactions | Title: RNA immunoprecipitation
| | edam:topic_3796 | edam:topic_3796 | Large-scale study (typically comparison) of DNA sequences of populations | Title: Population genomics
| | edam:topic_3810 | edam:topic_3810 | Multidisciplinary study, research and development within the field of agricul... | Title: Agricultural science
| | edam:topic_3837 | edam:topic_3837 | Approach which samples, in parallel, all genes in all organisms present in a ... | Title: Metagenomic sequencing
| | edam:topic_3855 | edam:topic_3855 | Study of the environment, the interactions between its physical, chemical, an... | Title: Environmental sciences
| | edam:topic_3892 | edam:topic_3892 | The study and simulation of molecular conformations using a computational mod... | Title: Biomolecular simulation
| | edam:topic_3895 | edam:topic_3895 | The application of multi-disciplinary science and technology for the construc... | Title: Synthetic biology
| | edam:topic_3912 | edam:topic_3912 | The application of biotechnology to directly manipulate an organism's genes | Title: Genetic engineering
| | edam:topic_3922 | edam:topic_3922 | A field of biological research focused on the discovery and identification of... | Title: Proteogenomics
| | edam:topic_3923 | edam:topic_3923 | Laboratory experiment to identify the differences between a specific genome (... | Title: Genome resequencing
| | edam:topic_3930 | edam:topic_3930 | A biomedical field that bridges immunology and genetics, to study the genetic... | Title: Immunogenetics
| | edam:topic_3931 | edam:topic_3931 | Interdisciplinary science focused on extracting information from chemical sys... | Title: Chemometrics
| | edam:topic_3934 | edam:topic_3934 | Cytometry is the measurement of the characteristics of cells | Title: Cytometry
| | edam:topic_3939 | edam:topic_3939 | Biotechnology approach that seeks to optimize cellular genetic and regulatory... | Title: Metabolic engineering
| | edam:topic_3940 | edam:topic_3940 | Molecular biology methods used to analyze the spatial organization of chromat... | Title: Chromosome conformation capture
| | edam:topic_3941 | edam:topic_3941 | The study of microbe gene expression within natural environments (i | Title: Metatranscriptomics
| | edam:topic_3943 | edam:topic_3943 | The reconstruction and analysis of genomic information in extinct species | Title: Paleogenomics
| | edam:topic_3944 | edam:topic_3944 | The biological classification of organisms by categorizing them in groups ("c... | Title: Cladistics
| | edam:topic_3945 | edam:topic_3945 | The study of the process and mechanism of change of biomolecules such as DNA,... | Title: Molecular evolution
| | edam:topic_3948 | edam:topic_3948 | Immunoinformatics is the field of computational biology that deals with the s... | Title: Immunoinformatics
| | edam:topic_3954 | edam:topic_3954 | A diagnostic imaging technique based on the application of ultrasound | Title: Echography
| | edam:topic_3955 | edam:topic_3955 | Experimental approaches to determine the rates of metabolic reactions - the m... | Title: Fluxomics
| | edam:topic_3957 | edam:topic_3957 | An experiment for studying protein-protein interactions | Title: Protein interaction experiment
| | edam:topic_3958 | edam:topic_3958 | A DNA structural variation, specifically a duplication or deletion event, res... | Title: Copy number variation
| | edam:topic_3959 | edam:topic_3959 | The branch of genetics concerned with the relationships between chromosomes a... | Title: Cytogenetics
| | edam:topic_3966 | edam:topic_3966 | The design of vaccines to protect against a particular pathogen, including an... | Title: Vaccinology
| | edam:topic_3967 | edam:topic_3967 | The study of immune system as a whole, its regulation and response to pathoge... | Title: Immunomics
| | edam:topic_3974 | edam:topic_3974 | Epistasis can be defined as the ability of the genotype at one locus to super... | Title: Epistasis
| | edam:topic_4010 | edam:topic_4010 | Open science encompasses the practices of making scientific research transpar... | Title: Open science
| | edam:topic_4011 | edam:topic_4011 | Data rescue denotes digitalisation, formatting, archival, and publication of ... | Title: Data rescue
| | edam:topic_4012 | edam:topic_4012 | FAIR data is scientific data that meets the principles of being findable, acc... | Title: FAIR data
| | edam:topic_4013 | edam:topic_4013 | Microbial mechanisms for protecting microorganisms against antimicrobial agen... | Title: Antimicrobial resistance
| | edam:topic_4014 | edam:topic_4014 | The monitoring method for measuring electrical activity in the brain | Title: Electroencephalography
| | edam:topic_4016 | edam:topic_4016 | The monitoring method for measuring electrical activity in the heart | Title: Electrocardiography
| | edam:topic_4017 | edam:topic_4017 | A method for studying biomolecules and other structures at very low (cryogeni... | Title: Cryogenic electron microscopy
| | edam:topic_4019 | edam:topic_4019 | Biosciences, or life sciences, include fields of study related to life, livin... | Title: Biosciences
| | edam:topic_4020 | edam:topic_4020 | The carbon cycle is the biogeochemical pathway of carbon moving through the d... | Title: Carbon cycle
| | edam:topic_4021 | edam:topic_4021 | Multiomics concerns integration of data from multiple omics (e | Title: Multiomics
| | edam:topic_4027 | edam:topic_4027 | With ribosome profiling, ribosome-protected mRNA fragments are analyzed with ... | Title: Ribosome Profiling
| | edam:topic_4028 | edam:topic_4028 | Combined with NGS (Next Generation Sequencing) technologies, single-cell sequ... | Title: Single-cell sequencing
| | edam:topic_4029 | edam:topic_4029 | The study of mechanical waves in liquids, solids, and gases | Title: Acoustics
| | edam:topic_4030 | edam:topic_4030 | Interdisplinary study of behavior, precise control, and manipulation of low (... | Title: Microfluidics
| | edam:topic_4037 | edam:topic_4037 | Genomic imprinting is a gene regulation mechanism by which a subset of genes ... | Title: Genomic imprinting
| | edam:topic_4038 | edam:topic_4038 | Metabarcoding is the barcoding of (environmental) DNA or RNA to identify mult... | Title: Metabarcoding
| | edam:topic_4044 | edam:topic_4044 | Data protection is a topic concerning data that should be protected from disc... | Title: Data protection
| | edam:topic_4045 | edam:topic_4045 | Cybersecurity is a topic comprising the approaches and technologies that enab... | Title: Cybersecurity
| | edam:topic_4046 | edam:topic_4046 | Version control is a technology for consistent management, storing, and shari... | Title: Version control
| | edam:topic_4047 | edam:topic_4047 | Software management comprises the practices and principles of taking care of ... | Title: Software management
| | edam:topic_4051 | edam:topic_4051 | Chromatin immunoprecipitation-based exeperiment similar to ChIP-seq, with an ... | Title: ChIP-exo
| | edam:topic_4052 | edam:topic_4052 | High-throughput genomic and epigenomic technique that capture chromatin confo... | Title: Hi-C
| | edam:topic_4053 | edam:topic_4053 | Assay for Transposase-Accessible Chromatin with high throughput sequencing | Title: ATAC-seq
| | edam:topic_4054 | edam:topic_4054 | Experiment in which the expression of a given gene is knocked down by means o... | Title: miRNA silencing
| | edam:topic_4055 | edam:topic_4055 | Experiment in which the expression of a given gene is knocked down by means o... | Title: siRNA experiment
| | edam:topic_4056 | edam:topic_4056 | Long-read sequencing is a sequencing method that produces reads thousands to ... | Title: Long-read sequencing
| | edam:topic_4057 | edam:topic_4057 | Short-read sequencing is a high-throughput sequencing method that generates m... | Title: Short-read sequencing
| | edam:topic_4060 | edam:topic_4060 | Metaproteomics is the profiling of proteins in a sample that contains materia... | Title: Metaproteomics
| | edam:topic_4061 | edam:topic_4061 | Bisulfite sequencing is a sequencing technique used to determine DNA methylat... | Title: Bisulfite sequencing
| | edam:topic_4062 | edam:topic_4062 | Bulk RNA barcoding and sequencing (BRB-seq) is a highly mutliplexed bulk RNA-... | Title: Bulk RNA barcoding and sequencing
| | edam:topic_4063 | edam:topic_4063 | DNase sequencing is a technique used to identify regions of open chromatin by... | Title: DNase sequencing
| | edam:topic_4064 | edam:topic_4064 | Specific sequencing of small RNAs using a variant of RNA-seq, with an additio... | Title: MicroRNA sequencing
| | edam:topic_4065 | edam:topic_4065 | Exposomics is the systematic and comprehensive study of the exposome and the ... | Title: Exposomics
| ## Identifier and Mapping Information ### Schema Source * from schema: https://includedcc.org/include-access-model ## LinkML Source
name: EnumDataCategory
description: Categories of data which may be collected about participants.
title: Data Category
from_schema: https://includedcc.org/include-access-model
rank: 1000
permissible_values:
edam:topic_0077:
text: edam:topic_0077
description: The processing and analysis of nucleic acid sequence, structural
and other data.
meaning: edam:topic_0077
title: Nucleic acids
edam:topic_0078:
text: edam:topic_0078
description: Archival, processing and analysis of protein data, typically molecular
sequence and structural data.
meaning: edam:topic_0078
title: Proteins
edam:topic_0080:
text: edam:topic_0080
description: The archival, processing and analysis of molecular sequences (monomer
composition of polymers) including molecular sequence data resources, sequence
sites, alignments, motifs and profiles.
meaning: edam:topic_0080
title: Sequence analysis
edam:topic_0081:
text: edam:topic_0081
description: The curation, processing, analysis and prediction of data about the
structure of biological molecules, typically proteins and nucleic acids and
other macromolecules.
meaning: edam:topic_0081
title: Structure analysis
edam:topic_0082:
text: edam:topic_0082
description: The prediction of molecular structure, including the prediction,
modelling, recognition or design of protein secondary or tertiary structure
or other structural features, and the folding of nucleic acid molecules and
the prediction or design of nucleic acid (typically RNA) sequences with specific
conformations.
meaning: edam:topic_0082
title: Structure prediction
edam:topic_0084:
text: edam:topic_0084
description: The study of evolutionary relationships amongst organisms.
meaning: edam:topic_0084
title: Phylogeny
edam:topic_0085:
text: edam:topic_0085
description: The study of gene or protein functions and their interactions in
totality in a given organism, tissue, cell etc.
meaning: edam:topic_0085
title: Functional genomics
edam:topic_0089:
text: edam:topic_0089
description: The conceptualisation, categorisation and nomenclature (naming) of
entities or phenomena within biology or bioinformatics. This includes formal
ontologies, controlled vocabularies, structured glossary, symbols and terminology
or other related resource.
meaning: edam:topic_0089
title: Ontology and terminology
edam:topic_0091:
text: edam:topic_0091
description: The archival, curation, processing and analysis of complex biological
data.
meaning: edam:topic_0091
title: Bioinformatics
edam:topic_0092:
text: edam:topic_0092
description: Rendering (drawing on a computer screen) or visualisation of molecular
sequences, structures or other biomolecular data.
meaning: edam:topic_0092
title: Data visualisation
edam:topic_0097:
text: edam:topic_0097
description: The archival, curation, processing and analysis of nucleic acid structural
information, such as whole structures, structural features and alignments, and
associated annotation.
meaning: edam:topic_0097
title: Nucleic acid structure analysis
edam:topic_0099:
text: edam:topic_0099
description: RNA sequences and structures.
meaning: edam:topic_0099
title: RNA
edam:topic_0102:
text: edam:topic_0102
description: The mapping of complete (typically nucleotide) sequences. Mapping
(in the sense of short read alignment, or more generally, just alignment) has
application in RNA-Seq analysis (mapping of transcriptomics reads), variant
discovery (e.g. mapping of exome capture), and re-sequencing (mapping of WGS
reads).
meaning: edam:topic_0102
title: Mapping
edam:topic_0108:
text: edam:topic_0108
description: The translation of mRNA into protein and subsequent protein processing
in the cell.
meaning: edam:topic_0108
title: Protein expression
edam:topic_0114:
text: edam:topic_0114
description: Gene structure, regions which make an RNA product and features such
as promoters, coding regions, gene fusion, splice sites etc.
meaning: edam:topic_0114
title: Gene structure
edam:topic_0121:
text: edam:topic_0121
description: Proteomics is in the narrow sense (sensu stricto) the application
of methods to separate, characterise, identify, and quantify all proteins (the
proteome) - or a substantial set of proteins - that are present in a sample.
Proteomics in the broad sense is the science of proteins and peptides on the
large scale.
meaning: edam:topic_0121
title: Proteomics
edam:topic_0122:
text: edam:topic_0122
description: The elucidation of the three dimensional structure for all (available)
proteins in a given organism.
meaning: edam:topic_0122
title: Structural genomics
edam:topic_0123:
text: edam:topic_0123
description: The study of the physical and biochemical properties of peptides
and proteins, for example the hydrophobic, hydrophilic and charge properties
of a protein.
meaning: edam:topic_0123
title: Protein properties
edam:topic_0128:
text: edam:topic_0128
description: Protein-protein, protein-DNA/RNA and protein-ligand interactions,
including analysis of known interactions and prediction of putative interactions.
meaning: edam:topic_0128
title: Protein interactions
edam:topic_0130:
text: edam:topic_0130
description: Protein stability, folding (in 3D space) and protein sequence-structure-function
relationships. This includes for example study of inter-atomic or inter-residue
interactions in protein (3D) structures, the effect of mutation, and the design
of proteins with specific properties, typically by designing changes (via site-directed
mutagenesis) to an existing protein.
meaning: edam:topic_0130
title: Protein folding, stability and design
edam:topic_0140:
text: edam:topic_0140
description: The study of how proteins are transported within and without the
cell, including signal peptides, protein subcellular localisation and export.
meaning: edam:topic_0140
title: Protein targeting and localisation
edam:topic_0152:
text: edam:topic_0152
description: Carbohydrates, typically including structural information.
meaning: edam:topic_0152
title: Carbohydrates
edam:topic_0153:
text: edam:topic_0153
description: Lipids and their structures.
meaning: edam:topic_0153
title: Lipidomics
edam:topic_0154:
text: edam:topic_0154
description: Small molecules of biological significance, typically archival, curation,
processing and analysis of structural information.
meaning: edam:topic_0154
title: Small molecules
edam:topic_0157:
text: edam:topic_0157
description: The archival, processing and analysis of the basic character composition
of molecular sequences, for example character or word frequency, ambiguity,
complexity, particularly regions of low complexity, and repeats or the repetitive
nature of molecular sequences.
meaning: edam:topic_0157
title: Sequence composition, complexity and repeats
edam:topic_0160:
text: edam:topic_0160
description: The archival, detection, prediction and analysis of positional features
such as functional and other key sites, in molecular sequences and the conserved
patterns (motifs, profiles etc.) that may be used to describe them.
meaning: edam:topic_0160
title: Sequence sites, features and motifs
edam:topic_0166:
text: edam:topic_0166
description: Structural features or common 3D motifs within protein structures,
including the surface of a protein structure, such as biological interfaces
with other molecules.
meaning: edam:topic_0166
title: Protein structural motifs and surfaces
edam:topic_0176:
text: edam:topic_0176
description: The study and simulation of molecular (typically protein) conformation
using a computational model of physical forces and computer simulation.
meaning: edam:topic_0176
title: Molecular dynamics
edam:topic_0194:
text: edam:topic_0194
description: The integrated study of evolutionary relationships and whole genome
data, for example, in the analysis of species trees, horizontal gene transfer
and evolutionary reconstruction.
meaning: edam:topic_0194
title: Phylogenomics
edam:topic_0196:
text: edam:topic_0196
description: The assembly of fragments of a DNA sequence to reconstruct the original
sequence.
meaning: edam:topic_0196
title: Sequence assembly
edam:topic_0199:
text: edam:topic_0199
description: Stable, naturally occurring mutations in a nucleotide sequence including
alleles, naturally occurring mutations such as single base nucleotide substitutions,
deletions and insertions, RFLPs and other polymorphisms.
meaning: edam:topic_0199
title: Genetic variation
edam:topic_0202:
text: edam:topic_0202
description: The study of drugs and their effects or responses in living systems.
meaning: edam:topic_0202
title: Pharmacology
edam:topic_0203:
text: edam:topic_0203
description: The analysis of levels and patterns of synthesis of gene products
(proteins and functional RNA) including interpretation in functional terms of
gene expression data.
meaning: edam:topic_0203
title: Gene expression
edam:topic_0204:
text: edam:topic_0204
description: The regulation of gene expression.
meaning: edam:topic_0204
title: Gene regulation
edam:topic_0208:
text: edam:topic_0208
description: The influence of genotype on drug response, for example by correlating
gene expression or single-nucleotide polymorphisms with drug efficacy or toxicity.
meaning: edam:topic_0208
title: Pharmacogenomics
edam:topic_0209:
text: edam:topic_0209
description: The design and chemical synthesis of bioactive molecules, for example
drugs or potential drug compounds, for medicinal purposes.
meaning: edam:topic_0209
title: Medicinal chemistry
edam:topic_0218:
text: edam:topic_0218
description: The processing and analysis of natural language, such as scientific
literature in English, in order to extract data and information, or to enable
human-computer interaction.
meaning: edam:topic_0218
title: Natural language processing
edam:topic_0219:
text: edam:topic_0219
description: Data curation and archival includes the preservation of data in a
repository, archive, or a deposition database; and curation of data and metadata,
database accessions, annotation, and data provenance.
meaning: edam:topic_0219
title: Data curation and archival
edam:topic_0593:
text: edam:topic_0593
description: An analytical technique that exploits the magenetic properties of
certain atomic nuclei to provide information on the structure, dynamics, reaction
state and chemical environment of molecules.
meaning: edam:topic_0593
title: NMR
edam:topic_0601:
text: edam:topic_0601
description: Protein chemical modifications, e.g. post-translational modifications.
meaning: edam:topic_0601
title: Protein modifications
edam:topic_0602:
text: edam:topic_0602
description: Molecular interactions, biological pathways, networks and other models.
meaning: edam:topic_0602
title: Molecular interactions, pathways and networks
edam:topic_0605:
text: edam:topic_0605
description: The study and practice of information processing and use of computer
information systems.
meaning: edam:topic_0605
title: Informatics
edam:topic_0607:
text: edam:topic_0607
description: Laboratory management and resources, for example, catalogues of biological
resources for use in the lab including cell lines, viruses, plasmids, phages,
DNA probes and primers and so on.
meaning: edam:topic_0607
title: Laboratory information management
edam:topic_0610:
text: edam:topic_0610
description: The ecological and environmental sciences and especially the application
of information technology (ecoinformatics).
meaning: edam:topic_0610
title: Ecology
edam:topic_0611:
text: edam:topic_0611
description: The study of matter by studying the interference pattern from firing
electrons at a sample, to analyse structures at resolutions higher than can
be achieved using light.
meaning: edam:topic_0611
title: Electron microscopy
edam:topic_0621:
text: edam:topic_0621
description: A specific organism, or group of organisms, used to study a particular
aspect of biology.
meaning: edam:topic_0621
title: Model organisms
edam:topic_0622:
text: edam:topic_0622
description: Whole genomes of one or more organisms, or genomes in general, such
as meta-information on genomes, genome projects, gene names etc.
meaning: edam:topic_0622
title: Genomics
edam:topic_0623:
text: edam:topic_0623
description: Particular gene(s), gene family or other gene group or system and
their encoded proteins.Primarily the classification of proteins (from sequence
or structural data) into clusters, groups, families etc., curation of a particular
protein or protein family, or any other proteins that have been classified as
members of a common group.
meaning: edam:topic_0623
title: Gene and protein families
edam:topic_0625:
text: edam:topic_0625
description: The study of genetic constitution of a living entity, such as an
individual, and organism, a cell and so on, typically with respect to a particular
observable phenotypic traits, or resources concerning such traits, which might
be an aspect of biochemistry, physiology, morphology, anatomy, development and
so on.
meaning: edam:topic_0625
title: Genotype and phenotype
edam:topic_0632:
text: edam:topic_0632
description: Molecular probes (e.g. a peptide probe or DNA microarray probe) or
PCR primers and hybridisation oligos in a nucleic acid sequence.
meaning: edam:topic_0632
title: Probes and primers
edam:topic_0634:
text: edam:topic_0634
description: Diseases, including diseases in general and the genes, gene variations
and proteins involved in one or more specific diseases.
meaning: edam:topic_0634
title: Pathology
edam:topic_0637:
text: edam:topic_0637
description: Organism classification, identification and naming.
meaning: edam:topic_0637
title: Taxonomy
edam:topic_0654:
text: edam:topic_0654
description: DNA sequences and structure, including processes such as methylation
and replication.
meaning: edam:topic_0654
title: DNA
edam:topic_0659:
text: edam:topic_0659
description: Non-coding or functional RNA sequences, including regulatory RNA
sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA).
meaning: edam:topic_0659
title: Functional, regulatory and non-coding RNA
edam:topic_0736:
text: edam:topic_0736
description: Protein tertiary structural domains and folds in a protein or polypeptide
chain.
meaning: edam:topic_0736
title: Protein folds and structural domains
edam:topic_0749:
text: edam:topic_0749
description: Proteins that bind to DNA and control transcription of DNA to mRNA
(transcription factors) and also transcriptional regulatory sites, elements
and regions (such as promoters, enhancers, silencers and boundary elements /
insulators) in nucleotide sequences.
meaning: edam:topic_0749
title: Transcription factors and regulatory sites
edam:topic_0769:
text: edam:topic_0769
description: Biological or biomedical analytical workflows or pipelines.
meaning: edam:topic_0769
title: Workflows
edam:topic_0780:
text: edam:topic_0780
description: Plants, e.g. information on a specific plant genome including molecular
sequences, genes and annotation.
meaning: edam:topic_0780
title: Plant biology
edam:topic_0781:
text: edam:topic_0781
description: Study of viruses, e.g. sequence and structural data, interactions
of viral proteins, or a viral genome including molecular sequences, genes and
annotation.
meaning: edam:topic_0781
title: Virology
edam:topic_0797:
text: edam:topic_0797
description: The study (typically comparison) of the sequence, structure or function
of multiple genomes.
meaning: edam:topic_0797
title: Comparative genomics
edam:topic_0798:
text: edam:topic_0798
description: Mobile genetic elements, such as transposons, Plasmids, Bacteriophage
elements and Group II introns.
meaning: edam:topic_0798
title: Mobile genetic elements
edam:topic_0804:
text: edam:topic_0804
description: The application of information technology to immunology such as immunological
processes, immunological genes, proteins and peptide ligands, antigens and so
on.
meaning: edam:topic_0804
title: Immunology
edam:topic_0820:
text: edam:topic_0820
description: Lipoproteins (protein-lipid assemblies), and proteins or region of
a protein that spans or are associated with a membrane.
meaning: edam:topic_0820
title: Membrane and lipoproteins
edam:topic_0821:
text: edam:topic_0821
description: Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed
reactions, enzyme nomenclature etc.
meaning: edam:topic_0821
title: Enzymes
edam:topic_1317:
text: edam:topic_1317
description: The molecular structure of biological molecules, particularly macromolecules
such as proteins and nucleic acids.
meaning: edam:topic_1317
title: Structural biology
edam:topic_1775:
text: edam:topic_1775
description: The study of gene and protein function including the prediction of
functional properties of a protein.
meaning: edam:topic_1775
title: Function analysis
edam:topic_2229:
text: edam:topic_2229
description: Cells, such as key genes and proteins involved in the cell cycle.
meaning: edam:topic_2229
title: Cell biology
edam:topic_2258:
text: edam:topic_2258
description: The application of information technology to chemistry in biological
research environment.
meaning: edam:topic_2258
title: Cheminformatics
edam:topic_2259:
text: edam:topic_2259
description: The holistic modelling and analysis of complex biological systems
and the interactions therein.
meaning: edam:topic_2259
title: Systems biology
edam:topic_2269:
text: edam:topic_2269
description: The application of statistical methods to biological problems.
meaning: edam:topic_2269
title: Statistics and probability
edam:topic_2275:
text: edam:topic_2275
description: The construction, analysis, evaluation, refinement etc. of models
of a molecules properties or behaviour, including the modelling the structure
of proteins in complex with small molecules or other macromolecules (docking).
meaning: edam:topic_2275
title: Molecular modelling
edam:topic_2533:
text: edam:topic_2533
description: DNA mutation.
meaning: edam:topic_2533
title: DNA mutation
edam:topic_2640:
text: edam:topic_2640
description: The study of cancer, for example, genes and proteins implicated in
cancer.
meaning: edam:topic_2640
title: Oncology
edam:topic_2814:
text: edam:topic_2814
description: Protein secondary or tertiary structural data and/or associated annotation.
meaning: edam:topic_2814
title: Protein structure analysis
edam:topic_2815:
text: edam:topic_2815
description: The study of human beings in general, including the human genome
and proteome.
meaning: edam:topic_2815
title: Human biology
edam:topic_2828:
text: edam:topic_2828
description: The study of matter and their structure by means of the diffraction
of X-rays, typically the diffraction pattern caused by the regularly spaced
atoms of a crystalline sample.
meaning: edam:topic_2828
title: X-ray diffraction
edam:topic_2830:
text: edam:topic_2830
description: Immunity-related proteins and their ligands.
meaning: edam:topic_2830
title: Immunoproteins and antigens
edam:topic_2840:
text: edam:topic_2840
description: Toxins and the adverse effects of these chemical substances on living
organisms.
meaning: edam:topic_2840
title: Toxicology
edam:topic_2885:
text: edam:topic_2885
description: DNA polymorphism.
meaning: edam:topic_2885
title: DNA polymorphism
edam:topic_3047:
text: edam:topic_3047
description: The molecular basis of biological activity, particularly the macromolecules
(e.g. proteins and nucleic acids) that are essential to life.
meaning: edam:topic_3047
title: Molecular biology
edam:topic_3050:
text: edam:topic_3050
description: The degree of variation of life forms within a given ecosystem, biome
or an entire planet.
meaning: edam:topic_3050
title: Biodiversity
edam:topic_3053:
text: edam:topic_3053
description: The study of genes, genetic variation and heredity in living organisms.
meaning: edam:topic_3053
title: Genetics
edam:topic_3055:
text: edam:topic_3055
description: The genes and genetic mechanisms such as Mendelian inheritance that
underly continuous phenotypic traits (such as height or weight).
meaning: edam:topic_3055
title: Quantitative genetics
edam:topic_3056:
text: edam:topic_3056
description: The distribution of allele frequencies in a population of organisms
and its change subject to evolutionary processes including natural selection,
genetic drift, mutation and gene flow.
meaning: edam:topic_3056
title: Population genetics
edam:topic_3063:
text: edam:topic_3063
description: The application of information technology to health, disease and
biomedicine.
meaning: edam:topic_3063
title: Medical informatics
edam:topic_3064:
text: edam:topic_3064
description: How organisms grow and develop.
meaning: edam:topic_3064
title: Developmental biology
edam:topic_3065:
text: edam:topic_3065
description: The development of organisms between the one-cell stage (typically
the zygote) and the end of the embryonic stage.
meaning: edam:topic_3065
title: Embryology
edam:topic_3067:
text: edam:topic_3067
description: The form and function of the structures of living organisms.
meaning: edam:topic_3067
title: Anatomy
edam:topic_3068:
text: edam:topic_3068
description: The scientific literature, language processing, reference information,
and documentation.
meaning: edam:topic_3068
title: Literature and language
edam:topic_3070:
text: edam:topic_3070
description: The study of life and living organisms, including their morphology,
biochemistry, physiology, development, evolution, and so on.
meaning: edam:topic_3070
title: Biology
edam:topic_3071:
text: edam:topic_3071
description: Data management comprises the practices and principles of taking
care of data, other than analysing them. This includes for example taking care
of the associated metadata, data formats, storage, preservation/archiving, access,
and legal aspects related to using and sharing data.
meaning: edam:topic_3071
title: Data management
edam:topic_3077:
text: edam:topic_3077
description: The acquisition of data, typically measurements of physical systems
using any type of sampling system, or by another other means.
meaning: edam:topic_3077
title: Data acquisition
edam:topic_3120:
text: edam:topic_3120
description: Protein sequence variants produced e.g. from alternative splicing,
alternative promoter usage, alternative initiation and ribosomal frameshifting.
meaning: edam:topic_3120
title: Protein variants
edam:topic_3125:
text: edam:topic_3125
description: Nucleic acids binding to some other molecule.
meaning: edam:topic_3125
title: DNA binding sites
edam:topic_3127:
text: edam:topic_3127
description: DNA replication or recombination.
meaning: edam:topic_3127
title: DNA replication and recombination
edam:topic_3168:
text: edam:topic_3168
description: The determination of complete (typically nucleotide) sequences, including
those of genomes (full genome sequencing, de novo sequencing and resequencing),
amplicons and transcriptomes.
meaning: edam:topic_3168
title: Sequencing
edam:topic_3169:
text: edam:topic_3169
description: The analysis of protein-DNA interactions where chromatin immunoprecipitation
(ChIP) is used in combination with massively parallel DNA sequencing to identify
the binding sites of DNA-associated proteins.
meaning: edam:topic_3169
title: ChIP-seq
edam:topic_3170:
text: edam:topic_3170
description: A topic concerning high-throughput sequencing of cDNA to measure
the RNA content (transcriptome) of a sample, for example, to investigate how
different alleles of a gene are expressed, detect post-transcriptional mutations
or identify gene fusions.
meaning: edam:topic_3170
title: RNA-Seq
edam:topic_3172:
text: edam:topic_3172
description: The systematic study of metabolites, the chemical processes they
are involved, and the chemical fingerprints of specific cellular processes in
a whole cell, tissue, organ or organism.
meaning: edam:topic_3172
title: Metabolomics
edam:topic_3173:
text: edam:topic_3173
description: The study of the epigenetic modifications of a whole cell, tissue,
organism etc.
meaning: edam:topic_3173
title: Epigenomics
edam:topic_3174:
text: edam:topic_3174
description: The study of genetic material recovered from environmental samples,
and associated environmental data.
meaning: edam:topic_3174
title: Metagenomics
edam:topic_3175:
text: edam:topic_3175
description: Variation in chromosome structure including microscopic and submicroscopic
types of variation such as deletions, duplications, copy-number variants, insertions,
inversions and translocations.
meaning: edam:topic_3175
title: Structural variation
edam:topic_3176:
text: edam:topic_3176
description: DNA-histone complexes (chromatin), organisation of chromatin into
nucleosomes and packaging into higher-order structures.
meaning: edam:topic_3176
title: DNA packaging
edam:topic_3179:
text: edam:topic_3179
description: Experimental techniques that combine chromatin immunoprecipitation
('ChIP') with microarray ('chip'). ChIP-on-chip is used for high-throughput
study protein-DNA interactions.
meaning: edam:topic_3179
title: ChIP-on-chip
edam:topic_3277:
text: edam:topic_3277
description: Biological samples and specimens.
meaning: edam:topic_3277
title: Sample collections
edam:topic_3292:
text: edam:topic_3292
description: Chemical substances and physico-chemical processes and that occur
within living organisms.
meaning: edam:topic_3292
title: Biochemistry
edam:topic_3293:
text: edam:topic_3293
description: The study of evolutionary relationships amongst organisms from analysis
of genetic information (typically gene or protein sequences).
meaning: edam:topic_3293
title: Phylogenetics
edam:topic_3295:
text: edam:topic_3295
description: Topic concerning the study of heritable changes, for example in gene
expression or phenotype, caused by mechanisms other than changes in the DNA
sequence.
meaning: edam:topic_3295
title: Epigenetics
edam:topic_3297:
text: edam:topic_3297
description: The exploitation of biological process, structure and function for
industrial purposes, for example the genetic manipulation of microorganisms
for the antibody production.
meaning: edam:topic_3297
title: Biotechnology
edam:topic_3298:
text: edam:topic_3298
description: Phenomes, or the study of the change in phenotype (the physical and
biochemical traits of organisms) in response to genetic and environmental factors.
meaning: edam:topic_3298
title: Phenomics
edam:topic_3299:
text: edam:topic_3299
description: The evolutionary processes, from the genetic to environmental scale,
that produced life in all its diversity.
meaning: edam:topic_3299
title: Evolutionary biology
edam:topic_3300:
text: edam:topic_3300
description: The functions of living organisms and their constituent parts.
meaning: edam:topic_3300
title: Physiology
edam:topic_3301:
text: edam:topic_3301
description: The biology of microorganisms.
meaning: edam:topic_3301
title: Microbiology
edam:topic_3302:
text: edam:topic_3302
description: The biology of parasites.
meaning: edam:topic_3302
title: Parasitology
edam:topic_3303:
text: edam:topic_3303
description: Research in support of healing by diagnosis, treatment, and prevention
of disease.
meaning: edam:topic_3303
title: Medicine
edam:topic_3304:
text: edam:topic_3304
description: The study of the nervous system and brain; its anatomy, physiology
and function.
meaning: edam:topic_3304
title: Neurobiology
edam:topic_3305:
text: edam:topic_3305
description: Topic concerning the the patterns, cause, and effect of disease within
populations.
meaning: edam:topic_3305
title: Public health and epidemiology
edam:topic_3306:
text: edam:topic_3306
description: The use of physics to study biological system.
meaning: edam:topic_3306
title: Biophysics
edam:topic_3307:
text: edam:topic_3307
description: The development and application of theory, analytical methods, mathematical
models and computational simulation of biological systems.
meaning: edam:topic_3307
title: Computational biology
edam:topic_3308:
text: edam:topic_3308
description: The analysis of transcriptomes, or a set of all the RNA molecules
in a specific cell, tissue etc.
meaning: edam:topic_3308
title: Transcriptomics
edam:topic_3314:
text: edam:topic_3314
description: The composition and properties of matter, reactions, and the use
of reactions to create new substances.
meaning: edam:topic_3314
title: Chemistry
edam:topic_3315:
text: edam:topic_3315
description: The study of numbers (quantity) and other topics including structure,
space, and change.
meaning: edam:topic_3315
title: Mathematics
edam:topic_3316:
text: edam:topic_3316
description: The theory and practical use of computer systems.
meaning: edam:topic_3316
title: Computer science
edam:topic_3318:
text: edam:topic_3318
description: The study of matter, space and time, and related concepts such as
energy and force.
meaning: edam:topic_3318
title: Physics
edam:topic_3320:
text: edam:topic_3320
description: RNA splicing; post-transcription RNA modification involving the removal
of introns and joining of exons.
meaning: edam:topic_3320
title: RNA splicing
edam:topic_3321:
text: edam:topic_3321
description: The structure and function of genes at a molecular level.
meaning: edam:topic_3321
title: Molecular genetics
edam:topic_3322:
text: edam:topic_3322
description: The study of respiratory system.
meaning: edam:topic_3322
title: Respiratory medicine
edam:topic_3324:
text: edam:topic_3324
description: The branch of medicine that deals with the prevention, diagnosis
and management of transmissible disease with clinically evident illness resulting
from infection with pathogenic biological agents (viruses, bacteria, fungi,
protozoa, parasites and prions).
meaning: edam:topic_3324
title: Infectious disease
edam:topic_3325:
text: edam:topic_3325
description: The study of rare diseases.
meaning: edam:topic_3325
title: Rare diseases
edam:topic_3332:
text: edam:topic_3332
description: Topic concerning the development and application of theory, analytical
methods, mathematical models and computational simulation of chemical systems.
meaning: edam:topic_3332
title: Computational chemistry
edam:topic_3334:
text: edam:topic_3334
description: The branch of medicine that deals with the anatomy, functions and
disorders of the nervous system.
meaning: edam:topic_3334
title: Neurology
edam:topic_3335:
text: edam:topic_3335
description: The diseases and abnormalities of the heart and circulatory system.
meaning: edam:topic_3335
title: Cardiology
edam:topic_3336:
text: edam:topic_3336
description: The discovery and design of drugs or potential drug compounds.
meaning: edam:topic_3336
title: Drug discovery
edam:topic_3337:
text: edam:topic_3337
description: Repositories of biological samples, typically human, for basic biological
and clinical research.
meaning: edam:topic_3337
title: Biobank
edam:topic_3338:
text: edam:topic_3338
description: Laboratory study of mice, for example, phenotyping, and mutagenesis
of mouse cell lines.
meaning: edam:topic_3338
title: Mouse clinic
edam:topic_3339:
text: edam:topic_3339
description: Collections of microbial cells including bacteria, yeasts and moulds.
meaning: edam:topic_3339
title: Microbial collection
edam:topic_3340:
text: edam:topic_3340
description: Collections of cells grown under laboratory conditions, specifically,
cells from multi-cellular eukaryotes and especially animal cells.
meaning: edam:topic_3340
title: Cell culture collection
edam:topic_3341:
text: edam:topic_3341
description: Collections of DNA, including both collections of cloned molecules,
and populations of micro-organisms that store and propagate cloned DNA.
meaning: edam:topic_3341
title: Clone library
edam:topic_3342:
text: edam:topic_3342
description: '''translating'' the output of basic and biomedical research into
better diagnostic tools, medicines, medical procedures, policies and advice.'
meaning: edam:topic_3342
title: Translational medicine
edam:topic_3343:
text: edam:topic_3343
description: Collections of chemicals, typically for use in high-throughput screening
experiments.
meaning: edam:topic_3343
title: Compound libraries and screening
edam:topic_3344:
text: edam:topic_3344
description: Topic concerning biological science that is (typically) performed
in the context of medicine.
meaning: edam:topic_3344
title: Biomedical science
edam:topic_3345:
text: edam:topic_3345
description: Topic concerning the identity of biological entities, or reports
on such entities, and the mapping of entities and records in different databases.
meaning: edam:topic_3345
title: Data identity and mapping
edam:topic_3360:
text: edam:topic_3360
description: Objective indicators of biological state often used to assess health,
and determinate treatment.
meaning: edam:topic_3360
title: Biomarkers
edam:topic_3365:
text: edam:topic_3365
description: The development of policies, models and standards that cover data
acquisition, storage and integration, such that it can be put to use, typically
through a process of systematically applying statistical and / or logical techniques
to describe, illustrate, summarise or evaluate data.
meaning: edam:topic_3365
title: Data architecture, analysis and design
edam:topic_3366:
text: edam:topic_3366
description: The combination and integration of data from different sources, for
example into a central repository or warehouse, to provide users with a unified
view of these data.
meaning: edam:topic_3366
title: Data integration and warehousing
edam:topic_3368:
text: edam:topic_3368
description: Any matter, surface or construct that interacts with a biological
system.
meaning: edam:topic_3368
title: Biomaterials
edam:topic_3369:
text: edam:topic_3369
description: The use of synthetic chemistry to study and manipulate biological
systems.
meaning: edam:topic_3369
title: Chemical biology
edam:topic_3370:
text: edam:topic_3370
description: The study of the separation, identification, and quantification of
the chemical components of natural and artificial materials.
meaning: edam:topic_3370
title: Analytical chemistry
edam:topic_3371:
text: edam:topic_3371
description: The use of chemistry to create new compounds.
meaning: edam:topic_3371
title: Synthetic chemistry
edam:topic_3372:
text: edam:topic_3372
description: The process that leads from an original formulation of a computing
problem to executable programs.
meaning: edam:topic_3372
title: Software engineering
edam:topic_3373:
text: edam:topic_3373
description: The process of bringing a new drug to market once a lead compounds
has been identified through drug discovery.
meaning: edam:topic_3373
title: Drug development
edam:topic_3374:
text: edam:topic_3374
description: The process of formulating and administering a pharmaceutical compound
to achieve a therapeutic effect.
meaning: edam:topic_3374
title: Biotherapeutics
edam:topic_3375:
text: edam:topic_3375
description: The study of how a drug interacts with the body.
meaning: edam:topic_3375
title: Drug metabolism
edam:topic_3376:
text: edam:topic_3376
description: The discovery, development and approval of medicines.
meaning: edam:topic_3376
title: Medicines research and development
edam:topic_3377:
text: edam:topic_3377
description: The safety (or lack) of drugs and other medical interventions.
meaning: edam:topic_3377
title: Safety sciences
edam:topic_3378:
text: edam:topic_3378
description: The detection, assessment, understanding and prevention of adverse
effects of medicines.
meaning: edam:topic_3378
title: Pharmacovigilance
edam:topic_3379:
text: edam:topic_3379
description: The testing of new medicines, vaccines or procedures on animals (preclinical)
and humans (clinical) prior to their approval by regulatory authorities.
meaning: edam:topic_3379
title: Preclinical and clinical studies
edam:topic_3382:
text: edam:topic_3382
description: The visual representation of an object.
meaning: edam:topic_3382
title: Imaging
edam:topic_3383:
text: edam:topic_3383
description: The use of imaging techniques to understand biology.
meaning: edam:topic_3383
title: Bioimaging
edam:topic_3384:
text: edam:topic_3384
description: The use of imaging techniques for clinical purposes for medical research.
meaning: edam:topic_3384
title: Medical imaging
edam:topic_3385:
text: edam:topic_3385
description: The use of optical instruments to magnify the image of an object.
meaning: edam:topic_3385
title: Light microscopy
edam:topic_3386:
text: edam:topic_3386
description: The use of animals and alternatives in experimental research.
meaning: edam:topic_3386
title: Laboratory animal science
edam:topic_3387:
text: edam:topic_3387
description: The study of organisms in the ocean or brackish waters.
meaning: edam:topic_3387
title: Marine biology
edam:topic_3388:
text: edam:topic_3388
description: The identification of molecular and genetic causes of disease and
the development of interventions to correct them.
meaning: edam:topic_3388
title: Molecular medicine
edam:topic_3390:
text: edam:topic_3390
description: The study of the effects of food components on the metabolism, health,
performance and disease resistance of humans and animals. It also includes the
study of human behaviours related to food choices.
meaning: edam:topic_3390
title: Nutritional science
edam:topic_3391:
text: edam:topic_3391
description: The collective characterisation and quantification of pools of biological
molecules that translate into the structure, function, and dynamics of an organism
or organisms.
meaning: edam:topic_3391
title: Omics
edam:topic_3393:
text: edam:topic_3393
description: The processes that need to be in place to ensure the quality of products
for human or animal use.
meaning: edam:topic_3393
title: Quality affairs
edam:topic_3394:
text: edam:topic_3394
description: The protection of public health by controlling the safety and efficacy
of products in areas including pharmaceuticals, veterinary medicine, medical
devices, pesticides, agrochemicals, cosmetics, and complementary medicines.
meaning: edam:topic_3394
title: Regulatory affairs
edam:topic_3395:
text: edam:topic_3395
description: Biomedical approaches to clinical interventions that involve the
use of stem cells.
meaning: edam:topic_3395
title: Regenerative medicine
edam:topic_3396:
text: edam:topic_3396
description: An interdisciplinary field of study that looks at the dynamic systems
of the human body as part of an integrted whole, incorporating biochemical,
physiological, and environmental interactions that sustain life.
meaning: edam:topic_3396
title: Systems medicine
edam:topic_3397:
text: edam:topic_3397
description: Topic concerning the branch of medicine that deals with the prevention,
diagnosis, and treatment of disease, disorder and injury in animals.
meaning: edam:topic_3397
title: Veterinary medicine
edam:topic_3398:
text: edam:topic_3398
description: The application of biological concepts and methods to the analytical
and synthetic methodologies of engineering.
meaning: edam:topic_3398
title: Bioengineering
edam:topic_3399:
text: edam:topic_3399
description: The branch of medicine dealing with the diagnosis, treatment and
prevention of disease in older people, and the problems specific to aging.
meaning: edam:topic_3399
title: Geriatric medicine
edam:topic_3400:
text: edam:topic_3400
description: Health issues related to the immune system and their prevention,
diagnosis and management.
meaning: edam:topic_3400
title: Allergy, clinical immunology and immunotherapeutics
edam:topic_3401:
text: edam:topic_3401
description: The prevention of pain and the evaluation, treatment and rehabilitation
of persons in pain.
meaning: edam:topic_3401
title: Pain medicine
edam:topic_3402:
text: edam:topic_3402
description: Anaesthesia and anaesthetics.
meaning: edam:topic_3402
title: Anaesthesiology
edam:topic_3403:
text: edam:topic_3403
description: The multidisciplinary that cares for patients with acute, life-threatening
illness or injury.
meaning: edam:topic_3403
title: Critical care medicine
edam:topic_3404:
text: edam:topic_3404
description: The branch of medicine that deals with prevention, diagnosis and
treatment of disorders of the skin, scalp, hair and nails.
meaning: edam:topic_3404
title: Dermatology
edam:topic_3405:
text: edam:topic_3405
description: The study, diagnosis, prevention and treatments of disorders of the
oral cavity, maxillofacial area and adjacent structures.
meaning: edam:topic_3405
title: Dentistry
edam:topic_3406:
text: edam:topic_3406
description: The branch of medicine that deals with the prevention, diagnosis,
and treatment of disorders of the ear, nose and throat.
meaning: edam:topic_3406
title: Ear, nose and throat medicine
edam:topic_3407:
text: edam:topic_3407
description: The branch of medicine dealing with diseases of endocrine organs,
hormone systems, their target organs, and disorders of the pathways of glucose
and lipid metabolism.
meaning: edam:topic_3407
title: Endocrinology and metabolism
edam:topic_3408:
text: edam:topic_3408
description: The branch of medicine that deals with the blood, blood-forming organs
and blood diseases.
meaning: edam:topic_3408
title: Haematology
edam:topic_3409:
text: edam:topic_3409
description: The branch of medicine that deals with disorders of the oesophagus,
stomach, duodenum, jejenum, ileum, large intestine, sigmoid colon and rectum.
meaning: edam:topic_3409
title: Gastroenterology
edam:topic_3410:
text: edam:topic_3410
description: The study of the biological and physiological differences between
males and females and how they effect differences in disease presentation and
management.
meaning: edam:topic_3410
title: Gender medicine
edam:topic_3411:
text: edam:topic_3411
description: The branch of medicine that deals with the health of the female reproductive
system, pregnancy and birth.
meaning: edam:topic_3411
title: Gynaecology and obstetrics
edam:topic_3412:
text: edam:topic_3412
description: The branch of medicine that deals with the liver, gallbladder, bile
ducts and bile.
meaning: edam:topic_3412
title: Hepatic and biliary medicine
edam:topic_3414:
text: edam:topic_3414
description: The branch of medicine that treats body wounds or shock produced
by sudden physical injury, as from violence or accident.
meaning: edam:topic_3414
title: Trauma medicine
edam:topic_3415:
text: edam:topic_3415
description: The branch of medicine that deals with the diagnosis, management
and prevention of poisoning and other adverse health effects caused by medications,
occupational and environmental toxins, and biological agents.
meaning: edam:topic_3415
title: Medical toxicology
edam:topic_3416:
text: edam:topic_3416
description: The branch of medicine that deals with the prevention, diagnosis,
and treatment of disorders of the muscle, bone and connective tissue. It incorporates
aspects of orthopaedics, rheumatology, rehabilitation medicine and pain medicine.
meaning: edam:topic_3416
title: Musculoskeletal medicine
edam:topic_3417:
text: edam:topic_3417
description: The branch of medicine that deals with disorders of the eye, including
eyelid, optic nerve/visual pathways and occular muscles.
meaning: edam:topic_3417
title: Ophthalmology
edam:topic_3418:
text: edam:topic_3418
description: The branch of medicine that deals with the medical care of infants,
children and adolescents.
meaning: edam:topic_3418
title: Paediatrics
edam:topic_3419:
text: edam:topic_3419
description: The branch of medicine that deals with the management of mental illness,
emotional disturbance and abnormal behaviour.
meaning: edam:topic_3419
title: Psychiatry
edam:topic_3420:
text: edam:topic_3420
description: The health of the reproductive processes, functions and systems at
all stages of life.
meaning: edam:topic_3420
title: Reproductive health
edam:topic_3421:
text: edam:topic_3421
description: The use of operative, manual and instrumental techniques on a patient
to investigate and/or treat a pathological condition or help improve bodily
function or appearance.
meaning: edam:topic_3421
title: Surgery
edam:topic_3422:
text: edam:topic_3422
description: The branches of medicine and physiology focussing on the function
and disorders of the urinary system in males and females, the reproductive system
in males, and the kidney.
meaning: edam:topic_3422
title: Urology and nephrology
edam:topic_3423:
text: edam:topic_3423
description: Medical therapies that fall beyond the scope of conventional medicine
but may be used alongside it in the treatment of disease and ill health.
meaning: edam:topic_3423
title: Complementary medicine
edam:topic_3444:
text: edam:topic_3444
description: Techniques that uses magnetic fields and radiowaves to form images,
typically to investigate the anatomy and physiology of the human body.
meaning: edam:topic_3444
title: MRI
edam:topic_3448:
text: edam:topic_3448
description: The study of matter by studying the diffraction pattern from firing
neutrons at a sample, typically to determine atomic and/or magnetic structure.
meaning: edam:topic_3448
title: Neutron diffraction
edam:topic_3452:
text: edam:topic_3452
description: Imaging in sections (sectioning), through the use of a wave-generating
device (tomograph) that generates an image (a tomogram).
meaning: edam:topic_3452
title: Tomography
edam:topic_3473:
text: edam:topic_3473
description: The discovery of patterns in large data sets and the extraction and
trasnsformation of those patterns into a useful format.
meaning: edam:topic_3473
title: Data mining
edam:topic_3474:
text: edam:topic_3474
description: A topic concerning the application of artificial intelligence methods
to algorithms, in order to create methods that can learn from data in order
to generate an output, rather than relying on explicitly encoded information
only.
meaning: edam:topic_3474
title: Machine learning
edam:topic_3489:
text: edam:topic_3489
description: The general handling of data stored in digital archives such as databases,
databanks, web portals, and other data resources.
meaning: edam:topic_3489
title: Database management
edam:topic_3500:
text: edam:topic_3500
description: Animals, e.g. information on a specific animal genome including molecular
sequences, genes and annotation.
meaning: edam:topic_3500
title: Zoology
edam:topic_3510:
text: edam:topic_3510
description: The biology, archival, detection, prediction and analysis of positional
features such as functional and other key sites, in protein sequences and the
conserved patterns (motifs, profiles etc.) that may be used to describe them.
meaning: edam:topic_3510
title: Protein sites, features and motifs
edam:topic_3511:
text: edam:topic_3511
description: The biology, archival, detection, prediction and analysis of positional
features such as functional and other key sites, in nucleic acid sequences and
the conserved patterns (motifs, profiles etc.) that may be used to describe
them.
meaning: edam:topic_3511
title: Nucleic acid sites, features and motifs
edam:topic_3512:
text: edam:topic_3512
description: Transcription of DNA into RNA and features of a messenger RNA (mRNA)
molecules including precursor RNA, primary (unprocessed) transcript and fully
processed molecules.
meaning: edam:topic_3512
title: Gene transcripts
edam:topic_3516:
text: edam:topic_3516
description: Genotype experiment including case control, population, and family
studies. These might use array based methods and re-sequencing methods.
meaning: edam:topic_3516
title: Genotyping experiment
edam:topic_3517:
text: edam:topic_3517
description: Genome-wide association study experiments.
meaning: edam:topic_3517
title: GWAS study
edam:topic_3518:
text: edam:topic_3518
description: Microarray experiments including conditions, protocol, sample:data
relationships etc.
meaning: edam:topic_3518
title: Microarray experiment
edam:topic_3519:
text: edam:topic_3519
description: PCR experiments, e.g. quantitative real-time PCR.
meaning: edam:topic_3519
title: PCR experiment
edam:topic_3520:
text: edam:topic_3520
description: Proteomics experiments.
meaning: edam:topic_3520
title: Proteomics experiment
edam:topic_3523:
text: edam:topic_3523
description: Experiment in which the expression of a specific gene is post-transcriptionally
knocked down or silenced by means of a small RNA (sRNA) causing the degradation
of the gene transcript (mRNA), and thus preventing the production of the corresponding
protein.
meaning: edam:topic_3523
title: RNAi experiment
edam:topic_3524:
text: edam:topic_3524
description: Biological computational model experiments (simulation), for example
the minimum information required in order to permit its correct interpretation
and reproduction.
meaning: edam:topic_3524
title: Simulation experiment
edam:topic_3534:
text: edam:topic_3534
description: Binding sites in proteins, including cleavage sites (for a proteolytic
enzyme or agent), key residues involved in protein folding, catalytic residues
(active site) of an enzyme, ligand-binding (non-catalytic) residues of a protein,
such as sites that bind metal, prosthetic groups or lipids, RNA and DNA-binding
proteins and binding sites etc.
meaning: edam:topic_3534
title: Protein binding sites
edam:topic_3538:
text: edam:topic_3538
description: Disordered structure in a protein.
meaning: edam:topic_3538
title: Protein disordered structure
edam:topic_3542:
text: edam:topic_3542
description: Secondary structure (predicted or real) of a protein, including super-secondary
structure.
meaning: edam:topic_3542
title: Protein secondary structure
edam:topic_3569:
text: edam:topic_3569
description: The application of mathematics to specific problems in science, typically
by the formulation and analysis of mathematical models.
meaning: edam:topic_3569
title: Applied mathematics
edam:topic_3570:
text: edam:topic_3570
description: The study of abstract mathematical concepts.
meaning: edam:topic_3570
title: Pure mathematics
edam:topic_3571:
text: edam:topic_3571
description: Data governance is the control of data entry and maintenance to ensure
the data meets defined standards, qualities, or constraints.
meaning: edam:topic_3571
title: Data governance
edam:topic_3572:
text: edam:topic_3572
description: The quality, integrity, and cleaning up of data.
meaning: edam:topic_3572
title: Data quality management
edam:topic_3573:
text: edam:topic_3573
description: The study of organisms in freshwater ecosystems.
meaning: edam:topic_3573
title: Freshwater biology
edam:topic_3574:
text: edam:topic_3574
description: The study of inheritance in human beings.
meaning: edam:topic_3574
title: Human genetics
edam:topic_3575:
text: edam:topic_3575
description: Health problems that are prevalent in tropical and subtropical regions.
meaning: edam:topic_3575
title: Tropical medicine
edam:topic_3576:
text: edam:topic_3576
description: Biotechnology applied to the medical sciences and the development
of medicines.
meaning: edam:topic_3576
title: Medical biotechnology
edam:topic_3577:
text: edam:topic_3577
description: An approach to medicine whereby decisions, practices and are tailored
to the individual patient based on their predicted response or risk of disease.
meaning: edam:topic_3577
title: Personalised medicine
edam:topic_3656:
text: edam:topic_3656
description: Experimental techniques to purify a protein-DNA crosslinked complex.
Usually sequencing follows e.g. in the techniques ChIP-chip, ChIP-seq and MeDIP-seq.
meaning: edam:topic_3656
title: Immunoprecipitation experiment
edam:topic_3673:
text: edam:topic_3673
description: Laboratory technique to sequence the complete DNA sequence of an
organism's genome at a single time.
meaning: edam:topic_3673
title: Whole genome sequencing
edam:topic_3674:
text: edam:topic_3674
description: Laboratory technique to sequence the methylated regions in DNA.
meaning: edam:topic_3674
title: Methylated DNA immunoprecipitation
edam:topic_3676:
text: edam:topic_3676
description: Laboratory technique to sequence all the protein-coding regions in
a genome, i.e., the exome.
meaning: edam:topic_3676
title: Exome sequencing
edam:topic_3678:
text: edam:topic_3678
description: The design of an experiment intended to test a hypothesis, and describe
or explain empirical data obtained under various experimental conditions.
meaning: edam:topic_3678
title: Experimental design and studies
edam:topic_3679:
text: edam:topic_3679
description: The design of an experiment involving non-human animals.
meaning: edam:topic_3679
title: Animal study
edam:topic_3697:
text: edam:topic_3697
description: The ecology of microorganisms including their relationship with one
another and their environment.
meaning: edam:topic_3697
title: Microbial ecology
edam:topic_3794:
text: edam:topic_3794
description: An antibody-based technique used to map in vivo RNA-protein interactions.
meaning: edam:topic_3794
title: RNA immunoprecipitation
edam:topic_3796:
text: edam:topic_3796
description: Large-scale study (typically comparison) of DNA sequences of populations.
meaning: edam:topic_3796
title: Population genomics
edam:topic_3810:
text: edam:topic_3810
description: Multidisciplinary study, research and development within the field
of agriculture.
meaning: edam:topic_3810
title: Agricultural science
edam:topic_3837:
text: edam:topic_3837
description: Approach which samples, in parallel, all genes in all organisms present
in a given sample, e.g. to provide insight into biodiversity and function.
meaning: edam:topic_3837
title: Metagenomic sequencing
edam:topic_3855:
text: edam:topic_3855
description: Study of the environment, the interactions between its physical,
chemical, and biological components and it's effect on life. Also how humans
impact upon the environment, and how we can manage and utilise natural resources.
meaning: edam:topic_3855
title: Environmental sciences
edam:topic_3892:
text: edam:topic_3892
description: The study and simulation of molecular conformations using a computational
model and computer simulations.
meaning: edam:topic_3892
title: Biomolecular simulation
edam:topic_3895:
text: edam:topic_3895
description: The application of multi-disciplinary science and technology for
the construction of artificial biological systems for diverse applications.
meaning: edam:topic_3895
title: Synthetic biology
edam:topic_3912:
text: edam:topic_3912
description: The application of biotechnology to directly manipulate an organism's
genes.
meaning: edam:topic_3912
title: Genetic engineering
edam:topic_3922:
text: edam:topic_3922
description: A field of biological research focused on the discovery and identification
of peptides, typically by comparing mass spectra against a protein database.
meaning: edam:topic_3922
title: Proteogenomics
edam:topic_3923:
text: edam:topic_3923
description: Laboratory experiment to identify the differences between a specific
genome (of an individual) and a reference genome (developed typically from many
thousands of individuals). WGS re-sequencing is used as golden standard to detect
variations compared to a given reference genome, including small variants (SNP
and InDels) as well as larger genome re-organisations (CNVs, translocations,
etc.).
meaning: edam:topic_3923
title: Genome resequencing
edam:topic_3930:
text: edam:topic_3930
description: A biomedical field that bridges immunology and genetics, to study
the genetic basis of the immune system.
meaning: edam:topic_3930
title: Immunogenetics
edam:topic_3931:
text: edam:topic_3931
description: Interdisciplinary science focused on extracting information from
chemical systems by data analytical approaches, for example multivariate statistics,
applied mathematics, and computer science.
meaning: edam:topic_3931
title: Chemometrics
edam:topic_3934:
text: edam:topic_3934
description: Cytometry is the measurement of the characteristics of cells.
meaning: edam:topic_3934
title: Cytometry
edam:topic_3939:
text: edam:topic_3939
description: Biotechnology approach that seeks to optimize cellular genetic and
regulatory processes in order to increase the cells' production of a certain
substance.
meaning: edam:topic_3939
title: Metabolic engineering
edam:topic_3940:
text: edam:topic_3940
description: Molecular biology methods used to analyze the spatial organization
of chromatin in a cell.
meaning: edam:topic_3940
title: Chromosome conformation capture
edam:topic_3941:
text: edam:topic_3941
description: The study of microbe gene expression within natural environments
(i.e. the metatranscriptome).
meaning: edam:topic_3941
title: Metatranscriptomics
edam:topic_3943:
text: edam:topic_3943
description: The reconstruction and analysis of genomic information in extinct
species.
meaning: edam:topic_3943
title: Paleogenomics
edam:topic_3944:
text: edam:topic_3944
description: The biological classification of organisms by categorizing them in
groups ("clades") based on their most recent common ancestor.
meaning: edam:topic_3944
title: Cladistics
edam:topic_3945:
text: edam:topic_3945
description: The study of the process and mechanism of change of biomolecules
such as DNA, RNA, and proteins across generations.
meaning: edam:topic_3945
title: Molecular evolution
edam:topic_3948:
text: edam:topic_3948
description: Immunoinformatics is the field of computational biology that deals
with the study of immunoloogical questions. Immunoinformatics is at the interface
between immunology and computer science. It takes advantage of computational,
statistical, mathematical approaches and enhances the understanding of immunological
knowledge.
meaning: edam:topic_3948
title: Immunoinformatics
edam:topic_3954:
text: edam:topic_3954
description: A diagnostic imaging technique based on the application of ultrasound.
meaning: edam:topic_3954
title: Echography
edam:topic_3955:
text: edam:topic_3955
description: Experimental approaches to determine the rates of metabolic reactions
- the metabolic fluxes - within a biological entity.
meaning: edam:topic_3955
title: Fluxomics
edam:topic_3957:
text: edam:topic_3957
description: An experiment for studying protein-protein interactions.
meaning: edam:topic_3957
title: Protein interaction experiment
edam:topic_3958:
text: edam:topic_3958
description: A DNA structural variation, specifically a duplication or deletion
event, resulting in sections of the genome to be repeated, or the number of
repeats in the genome to vary between individuals.
meaning: edam:topic_3958
title: Copy number variation
edam:topic_3959:
text: edam:topic_3959
description: The branch of genetics concerned with the relationships between chromosomes
and cellular behaviour, especially during mitosis and meiosis.
meaning: edam:topic_3959
title: Cytogenetics
edam:topic_3966:
text: edam:topic_3966
description: The design of vaccines to protect against a particular pathogen,
including antigens, delivery systems, and adjuvants to elicit a predictable
immune response against specific epitopes.
meaning: edam:topic_3966
title: Vaccinology
edam:topic_3967:
text: edam:topic_3967
description: The study of immune system as a whole, its regulation and response
to pathogens using genome-wide approaches.
meaning: edam:topic_3967
title: Immunomics
edam:topic_3974:
text: edam:topic_3974
description: 'Epistasis can be defined as the ability of the genotype at one locus
to supersede the phenotypic effect of a mutation at another locus. This interaction
between genes can occur at different level: gene expression, protein levels,
etc...'
meaning: edam:topic_3974
title: Epistasis
edam:topic_4010:
text: edam:topic_4010
description: Open science encompasses the practices of making scientific research
transparent and participatory, and its outputs publicly accessible.
meaning: edam:topic_4010
title: Open science
edam:topic_4011:
text: edam:topic_4011
description: Data rescue denotes digitalisation, formatting, archival, and publication
of data that were not available in accessible or usable form. Examples are data
from private archives, data inside publications, or in paper records stored
privately or publicly.
meaning: edam:topic_4011
title: Data rescue
edam:topic_4012:
text: edam:topic_4012
description: FAIR data is scientific data that meets the principles of being findable,
accessible, interoperable, and reusable.
meaning: edam:topic_4012
title: FAIR data
edam:topic_4013:
text: edam:topic_4013
description: Microbial mechanisms for protecting microorganisms against antimicrobial
agents.
meaning: edam:topic_4013
title: Antimicrobial resistance
edam:topic_4014:
text: edam:topic_4014
description: The monitoring method for measuring electrical activity in the brain.
meaning: edam:topic_4014
title: Electroencephalography
edam:topic_4016:
text: edam:topic_4016
description: The monitoring method for measuring electrical activity in the heart.
meaning: edam:topic_4016
title: Electrocardiography
edam:topic_4017:
text: edam:topic_4017
description: A method for studying biomolecules and other structures at very low
(cryogenic) temperature using electron microscopy.
meaning: edam:topic_4017
title: Cryogenic electron microscopy
edam:topic_4019:
text: edam:topic_4019
description: Biosciences, or life sciences, include fields of study related to
life, living beings, and biomolecules.
meaning: edam:topic_4019
title: Biosciences
edam:topic_4020:
text: edam:topic_4020
description: The carbon cycle is the biogeochemical pathway of carbon moving through
the different parts of the Earth (such as ocean, atmosphere, soil), or eventually
another planet.
meaning: edam:topic_4020
title: Carbon cycle
edam:topic_4021:
text: edam:topic_4021
description: Multiomics concerns integration of data from multiple omics (e.g.
transcriptomics, proteomics, epigenomics).
meaning: edam:topic_4021
title: Multiomics
edam:topic_4027:
text: edam:topic_4027
description: With ribosome profiling, ribosome-protected mRNA fragments are analyzed
with RNA-seq techniques leading to a genome-wide measurement of the translation
landscape.
meaning: edam:topic_4027
title: Ribosome Profiling
edam:topic_4028:
text: edam:topic_4028
description: Combined with NGS (Next Generation Sequencing) technologies, single-cell
sequencing allows the study of genetic information (DNA, RNA, epigenome...)
at a single cell level. It is often used for differential analysis and gene
expression profiling.
meaning: edam:topic_4028
title: Single-cell sequencing
edam:topic_4029:
text: edam:topic_4029
description: The study of mechanical waves in liquids, solids, and gases.
meaning: edam:topic_4029
title: Acoustics
edam:topic_4030:
text: edam:topic_4030
description: Interdisplinary study of behavior, precise control, and manipulation
of low (microlitre) volume fluids in constrained space.
meaning: edam:topic_4030
title: Microfluidics
edam:topic_4037:
text: edam:topic_4037
description: Genomic imprinting is a gene regulation mechanism by which a subset
of genes are expressed from one of the two parental chromosomes only. Imprinted
genes are organized in clusters, their silencing/activation of the imprinted
loci involves epigenetic marks (DNA methylation, etc) and so-called imprinting
control regions (ICR). It has been described in mammals, but also plants and
insects.
meaning: edam:topic_4037
title: Genomic imprinting
edam:topic_4038:
text: edam:topic_4038
description: Metabarcoding is the barcoding of (environmental) DNA or RNA to identify
multiple taxa from the same sample.
meaning: edam:topic_4038
title: Metabarcoding
edam:topic_4044:
text: edam:topic_4044
description: Data protection is a topic concerning data that should be protected
from disclosure, damage, or unauthorised access, due to its sensitive nature.
meaning: edam:topic_4044
title: Data protection
edam:topic_4045:
text: edam:topic_4045
description: Cybersecurity is a topic comprising the approaches and technologies
that enable the protection of computer systems, networks and programs from digital
attacks. It ensures the availability, integrity, and confidentiality of processed
and stored information.
meaning: edam:topic_4045
title: Cybersecurity
edam:topic_4046:
text: edam:topic_4046
description: Version control is a technology for consistent management, storing,
and sharing of evolving versions of digital artefacts, such as computer programs,
scripts, documents, data, or media files.
meaning: edam:topic_4046
title: Version control
edam:topic_4047:
text: edam:topic_4047
description: Software management comprises the practices and principles of taking
care of software and software-based or software-like services, other than programming
and maintenance. This includes for example taking care of the associated information
and documentation, and the processes of contribution, validation, release/publication,
or deployment.
meaning: edam:topic_4047
title: Software management
edam:topic_4051:
text: edam:topic_4051
description: Chromatin immunoprecipitation-based exeperiment similar to ChIP-seq,
with an additional experimental step using an exonuclease to increase the resolution
of protein binding site identification.
meaning: edam:topic_4051
title: ChIP-exo
edam:topic_4052:
text: edam:topic_4052
description: High-throughput genomic and epigenomic technique that capture chromatin
conformation, allowing a genome-wide identification of chromatin interactions
and structure.
meaning: edam:topic_4052
title: Hi-C
edam:topic_4053:
text: edam:topic_4053
description: Assay for Transposase-Accessible Chromatin with high throughput sequencing.
This technique is designed for the genome-wide detection of open chromatin regions.
meaning: edam:topic_4053
title: ATAC-seq
edam:topic_4054:
text: edam:topic_4054
description: Experiment in which the expression of a given gene is knocked down
by means of a micro RNA (miRNA) causing the degradation of the gene transcript
(mRNA).
meaning: edam:topic_4054
title: miRNA silencing
edam:topic_4055:
text: edam:topic_4055
description: Experiment in which the expression of a given gene is knocked down
by means of a small interfering RNA (siRNA) causing the degradation of the gene
transcript (mRNA).
meaning: edam:topic_4055
title: siRNA experiment
edam:topic_4056:
text: edam:topic_4056
description: Long-read sequencing is a sequencing method that produces reads thousands
to millions of base pairs long, allowing for better resolution of complex regions,
structural variants, and full-length transcripts.
meaning: edam:topic_4056
title: Long-read sequencing
edam:topic_4057:
text: edam:topic_4057
description: Short-read sequencing is a high-throughput sequencing method that
generates millions of short nucleotide fragments, typically 50–300 base pairs
in length.
meaning: edam:topic_4057
title: Short-read sequencing
edam:topic_4060:
text: edam:topic_4060
description: Metaproteomics is the profiling of proteins in a sample that contains
material from multiple species or strains of organisms.
meaning: edam:topic_4060
title: Metaproteomics
edam:topic_4061:
text: edam:topic_4061
description: Bisulfite sequencing is a sequencing technique used to determine
DNA methylation patterns by treating DNA with bisulfite, which converts unmethylated
cytosines to uracils while leaving methylated cytosines unchanged.
meaning: edam:topic_4061
title: Bisulfite sequencing
edam:topic_4062:
text: edam:topic_4062
description: Bulk RNA barcoding and sequencing (BRB-seq) is a highly mutliplexed
bulk RNA-Seq technique where each RNA sample gets a barcode, and many samples
are sequenced together.
meaning: edam:topic_4062
title: Bulk RNA barcoding and sequencing
edam:topic_4063:
text: edam:topic_4063
description: DNase sequencing is a technique used to identify regions of open
chromatin by sequencing DNA fragments generated after treatment with DNase I,
which preferentially cuts accessible DNA.
meaning: edam:topic_4063
title: DNase sequencing
edam:topic_4064:
text: edam:topic_4064
description: Specific sequencing of small RNAs using a variant of RNA-seq, with
an additional fragment size selection step.
meaning: edam:topic_4064
title: MicroRNA sequencing
edam:topic_4065:
text: edam:topic_4065
description: Exposomics is the systematic and comprehensive study of the exposome
and the associated biological responses (exposure-phenotype interaction). Exposome
is the totality of environmental exposures, that is, the cumulative (e.g. life-long)
totality of contacts between external factors (e.g. chemical agents) and a living
organism, a population, or a biological taxon.
meaning: edam:topic_4065
title: Exposomics
reachable_from:
source_ontology: bioregistry:edam
source_nodes:
- edam:topic_0003
relationship_types:
- rdfs:subClassOf
is_direct: false
include_self: false