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Class: Subject Assertion (SubjectAssertion)

Assertion about a particular Subject. May include Conditions, Measurements, etc.

URI: includedcc:SubjectAssertion

classDiagram class SubjectAssertion click SubjectAssertion href "../SubjectAssertion/" Record <|-- SubjectAssertion click Record href "../Record/" SubjectAssertion : age_at_assertion SubjectAssertion : age_at_event SubjectAssertion : age_at_resolution SubjectAssertion : assertion_id SubjectAssertion : assertion_provenance SubjectAssertion --> "0..1" EnumAssertionProvenance : assertion_provenance click EnumAssertionProvenance href "../EnumAssertionProvenance/" SubjectAssertion : concept SubjectAssertion --> "*" Concept : concept click Concept href "../Concept/" SubjectAssertion : concept_source SubjectAssertion : external_id SubjectAssertion : subject_id SubjectAssertion : value_concept SubjectAssertion --> "*" Concept : value_concept click Concept href "../Concept/" SubjectAssertion : value_number SubjectAssertion : value_source SubjectAssertion : value_units SubjectAssertion --> "0..1" Concept : value_units click Concept href "../Concept/" SubjectAssertion : value_units_source

Inheritance

Slots

Name Cardinality and Range Description Inheritance
assertion_id 1
String		 INLCUDE Global ID for the Assertion direct
subject_id 0..1
String		 INLCUDE Global ID for the Subject direct
assertion_provenance 0..1
EnumAssertionProvenance		 The original source of this assertion direct
age_at_assertion 0..1
Integer		 The age in days of the Subject when the assertion was made direct
age_at_event 0..1
Integer		 The age in days of the Subject at the time point which the assertion describe... direct
age_at_resolution 0..1
Integer		 The age in days of the Subject when the asserted state was resolved direct
concept *
Concept		 The structured term defining the meaning of the assertion direct
concept_source 0..1
String		 The source text yielding the standardized concept direct
value_concept *
Concept		 The structured term defining the value of the assertion direct
value_number 0..1
Float		 The numeric value of the assertion direct
value_source 0..1
String		 The source text yielding the value direct
value_units 0..1
Concept		 The structured term defining the units of the value direct
value_units_source 0..1
String		 The source text yielding the value's units direct
external_id *
Uriorcurie		 Other identifiers for this entity, eg, from the submitting study or in system... Record

Identifier and Mapping Information

Schema Source

  • from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type Mapped Value
self includedcc:SubjectAssertion
native includedcc:SubjectAssertion

LinkML Source

Direct

name: SubjectAssertion
description: Assertion about a particular Subject. May include Conditions, Measurements,
  etc.
title: Subject Assertion
from_schema: https://includedcc.org/include-access-model
is_a: Record
slots:
- assertion_id
- subject_id
- assertion_provenance
- age_at_assertion
- age_at_event
- age_at_resolution
- concept
- concept_source
- value_concept
- value_number
- value_source
- value_units
- value_units_source
slot_usage:
  assertion_id:
    name: assertion_id
    identifier: true
    required: true

Induced

name: SubjectAssertion
description: Assertion about a particular Subject. May include Conditions, Measurements,
  etc.
title: Subject Assertion
from_schema: https://includedcc.org/include-access-model
is_a: Record
slot_usage:
  assertion_id:
    name: assertion_id
    identifier: true
    required: true
attributes:
  assertion_id:
    name: assertion_id
    description: INLCUDE Global ID for the Assertion
    title: Assertion ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    alias: assertion_id
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
    required: true
    multivalued: false
  subject_id:
    name: subject_id
    description: INLCUDE Global ID for the Subject
    title: Study ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: subject_id
    owner: SubjectAssertion
    domain_of:
    - Subject
    - Demographics
    - SubjectAssertion
    range: string
    multivalued: false
  assertion_provenance:
    name: assertion_provenance
    description: The original source of this assertion
    title: Assertion Provenance
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: assertion_provenance
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: EnumAssertionProvenance
  age_at_assertion:
    name: age_at_assertion
    description: The age in days of the Subject when the assertion was made.
    title: Age at assertion
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: age_at_assertion
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: integer
    unit:
      ucum_code: d
  age_at_event:
    name: age_at_event
    description: The age in days of the Subject at the time point which the assertion
      describes, | eg, age of onset or when a measurement was performed.
    title: Age at event
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: age_at_event
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: integer
    unit:
      ucum_code: d
  age_at_resolution:
    name: age_at_resolution
    description: The age in days of the Subject when the asserted state was resolved.
    title: Age at resolution
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: age_at_resolution
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: integer
    unit:
      ucum_code: d
  concept:
    name: concept
    description: The structured term defining the meaning of the assertion.
    title: Assertion concept
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: concept
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
    multivalued: true
  concept_source:
    name: concept_source
    description: The source text yielding the standardized concept.
    title: Concept Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: concept_source
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  value_concept:
    name: value_concept
    description: The structured term defining the value of the assertion.
    title: Value concept
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: value_concept
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
    multivalued: true
  value_number:
    name: value_number
    description: The numeric value of the assertion.
    title: Value Number
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: value_number
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: float
  value_source:
    name: value_source
    description: The source text yielding the value.
    title: Value Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: value_source
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  value_units:
    name: value_units
    description: The structured term defining the units of the value.
    title: Value Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: value_units
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: Concept
  value_units_source:
    name: value_units_source
    description: The source text yielding the value's units.
    title: Value Units Source Text
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: value_units_source
    owner: SubjectAssertion
    domain_of:
    - SubjectAssertion
    range: string
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: external_id
    owner: SubjectAssertion
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true