Class: Sample (Sample)

A functionally equivalent specimen taken from a participant or processed from such a sample.

classDiagram class Sample click Sample href "../Sample/" Record <|-- Sample click Record href "../Record/" Sample : availablity_status Sample --> "0..1" EnumAvailabilityStatus : availablity_status click EnumAvailabilityStatus href "../EnumAvailabilityStatus/" Sample : biospecimen_collection_id Sample --> "0..1" BiospecimenCollection : biospecimen_collection_id click BiospecimenCollection href "../BiospecimenCollection/" Sample : external_id Sample : parent_sample_id Sample --> "0..1" Sample : parent_sample_id click Sample href "../Sample/" Sample : processing Sample : quantity_number Sample : quantity_unit Sample --> "0..1" Concept : quantity_unit click Concept href "../Concept/" Sample : sample_id Sample : sample_type Sample : storage_method

Inheritance

Record
- Sample

Slots

Name	Cardinality and Range	Description	Inheritance
sample_id	1 String	The unique identifier for this Sample	direct
biospecimen_collection_id	0..1 BiospecimenCollection	Biospecimen Collection during which this sample was generated	direct
parent_sample_id	0..1 Sample	Sample from which this sample is derived	direct
sample_type	1 Uriorcurie	Type of material of which this Sample is comprised	direct
processing	* Uriorcurie	Processing that was applied to the Parent Sample or from the Biospecimen Coll...	direct
availablity_status	0..1 EnumAvailabilityStatus	Can this Sample be requested for further analysis?	direct
storage_method	* Uriorcurie	Sample storage method, eg, Frozen or with additives	direct
quantity_number	0..1 Float	The total quantity of the specimen	direct
quantity_unit	0..1 Concept	The structured term defining the units of the quantity	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record

Usages

used by	used in	type	used
Sample	parent_sample_id	range	Sample
Aliquot	sample_id	range	Sample
File	sample_id	range	Sample

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type	Mapped Value
self	includedcc:Sample
native	includedcc:Sample

LinkML Source

Direct

name: Sample
description: A functionally equivalent specimen taken from a participant or processed
  from such a sample.
title: Sample
from_schema: https://includedcc.org/include-access-model
is_a: Record
slots:
- sample_id
- biospecimen_collection_id
- parent_sample_id
- sample_type
- processing
- availablity_status
- storage_method
- quantity_number
- quantity_unit
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
    range: string
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.

Induced

name: Sample
description: A functionally equivalent specimen taken from a participant or processed
  from such a sample.
title: Sample
from_schema: https://includedcc.org/include-access-model
is_a: Record
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
    range: string
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.
attributes:
  sample_id:
    name: sample_id
    description: The unique identifier for this Sample.
    title: Sample ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    alias: sample_id
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    - File
    range: string
    required: true
  biospecimen_collection_id:
    name: biospecimen_collection_id
    description: Biospecimen Collection during which this sample was generated.
    title: Biospecimen Collection ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: biospecimen_collection_id
    owner: Sample
    domain_of:
    - Sample
    - BiospecimenCollection
    range: BiospecimenCollection
  parent_sample_id:
    name: parent_sample_id
    description: Sample from which this sample is derived
    title: Parent Sample ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: parent_sample_id
    owner: Sample
    domain_of:
    - Sample
    range: Sample
    inlined: false
  sample_type:
    name: sample_type
    description: Type of material of which this Sample is comprised
    title: Sample Type
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: sample_type
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    required: true
  processing:
    name: processing
    description: Processing that was applied to the Parent Sample or from the Biospecimen
      Collection that yielded this distinct sample
    title: Sample Processing
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: processing
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    multivalued: true
  availablity_status:
    name: availablity_status
    description: Can this Sample be requested for further analysis?
    title: Sample Availability
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: availablity_status
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: EnumAvailabilityStatus
  storage_method:
    name: storage_method
    description: Sample storage method, eg, Frozen or with additives
    title: Sample Storage Method
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: storage_method
    owner: Sample
    domain_of:
    - Sample
    range: uriorcurie
    multivalued: true
  quantity_number:
    name: quantity_number
    description: The total quantity of the specimen
    title: Quantity
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: quantity_number
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: float
  quantity_unit:
    name: quantity_unit
    description: The structured term defining the units of the quantity.
    title: Quantity Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: quantity_unit
    owner: Sample
    domain_of:
    - Sample
    - Aliquot
    range: Concept
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: external_id
    owner: Sample
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true