Class: Aliquot (Aliquot)

A specific tube or amount of a biospecimen associated with a Sample.

classDiagram class Aliquot click Aliquot href "../Aliquot/" Record <|-- Aliquot click Record href "../Record/" Aliquot : aliquot_id Aliquot : availablity_status Aliquot --> "0..1" EnumAvailabilityStatus : availablity_status click EnumAvailabilityStatus href "../EnumAvailabilityStatus/" Aliquot : concentration_number Aliquot : concentration_unit Aliquot --> "0..1" Concept : concentration_unit click Concept href "../Concept/" Aliquot : external_id Aliquot : quantity_number Aliquot : quantity_unit Aliquot --> "0..1" Concept : quantity_unit click Concept href "../Concept/" Aliquot : sample_id Aliquot --> "0..1" Sample : sample_id click Sample href "../Sample/"

Inheritance

Record
- Aliquot

Slots

Name	Cardinality and Range	Description	Inheritance
aliquot_id	1 String	Unique identifier for an Aliquot	direct
sample_id	0..1 Sample	The unique identifier for this Sample	direct
availablity_status	0..1 EnumAvailabilityStatus	Can this Sample be requested for further analysis?	direct
quantity_number	0..1 Float	The total quantity of the specimen	direct
quantity_unit	0..1 Concept	The structured term defining the units of the quantity	direct
concentration_number	0..1 Float	What is the concentration of the analyte in the Aliquot?	direct
concentration_unit	0..1 Concept	Units associated with the concentration of the analyte in the Aliquot	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/include-access-model

Mappings

Mapping Type	Mapped Value
self	includedcc:Aliquot
native	includedcc:Aliquot

LinkML Source

Direct

name: Aliquot
description: A specific tube or amount of a biospecimen associated with a Sample.
title: Aliquot
from_schema: https://includedcc.org/include-access-model
is_a: Record
slots:
- aliquot_id
- sample_id
- availablity_status
- quantity_number
- quantity_unit
- concentration_number
- concentration_unit
slot_usage:
  aliquot_id:
    name: aliquot_id
    identifier: true
    range: string
    required: true

Induced

name: Aliquot
description: A specific tube or amount of a biospecimen associated with a Sample.
title: Aliquot
from_schema: https://includedcc.org/include-access-model
is_a: Record
slot_usage:
  aliquot_id:
    name: aliquot_id
    identifier: true
    range: string
    required: true
attributes:
  aliquot_id:
    name: aliquot_id
    description: Unique identifier for an Aliquot.
    title: Aliquot ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    identifier: true
    alias: aliquot_id
    owner: Aliquot
    domain_of:
    - Aliquot
    range: string
    required: true
  sample_id:
    name: sample_id
    description: The unique identifier for this Sample.
    title: Sample ID
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: sample_id
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    - File
    range: Sample
  availablity_status:
    name: availablity_status
    description: Can this Sample be requested for further analysis?
    title: Sample Availability
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: availablity_status
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: EnumAvailabilityStatus
  quantity_number:
    name: quantity_number
    description: The total quantity of the specimen
    title: Quantity
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: quantity_number
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: float
  quantity_unit:
    name: quantity_unit
    description: The structured term defining the units of the quantity.
    title: Quantity Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: quantity_unit
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: Concept
  concentration_number:
    name: concentration_number
    description: What is the concentration of the analyte in the Aliquot?
    title: Concentration
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: concentration_number
    owner: Aliquot
    domain_of:
    - Aliquot
    range: float
  concentration_unit:
    name: concentration_unit
    description: Units associated with the concentration of the analyte in the Aliquot.
    title: Concentration Units
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: concentration_unit
    owner: Aliquot
    domain_of:
    - Aliquot
    range: Concept
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/include-access-model
    rank: 1000
    alias: external_id
    owner: Aliquot
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true