Class: Assay (Assay)

A specific assay that was performed on given subject(s) or sample(s).

classDiagram class Assay click Assay href "../Assay/" Record <|-- Assay click Record href "../Record/" Assay : access_policy_id Assay --> "0..1" AccessPolicy : access_policy_id click AccessPolicy href "../AccessPolicy/" Assay : activity_definition_id Assay --> "0..1" ActivityDefinition : activity_definition_id click ActivityDefinition href "../ActivityDefinition/" Assay : assay_id Assay : assay_source Assay : assay_type Assay --> "1" EnumAssayType : assay_type click EnumAssayType href "../EnumAssayType/" Assay : external_id Assay : file_id Assay --> "*" File : file_id click File href "../File/" Assay : sample_id Assay --> "*" Sample : sample_id click Sample href "../Sample/" Assay : study_id Assay --> "0..1" Study : study_id click Study href "../Study/" Assay : subject_id Assay --> "*" Subject : subject_id click Subject href "../Subject/"

Inheritance

Record
- Assay

Slots

Name	Cardinality and Range	Description	Inheritance
assay_id	1 DiGlobalID	The unique identifier for the Assay	direct
subject_id	* Subject	INCLUDE Global ID for the Subject	direct
sample_id	* Sample	The unique identifier for this Sample	direct
file_id	* File	Unique identifier for this File	direct
assay_type	1 EnumAssayType	The type of assay performed	direct
assay_source	0..1 String	The original description of the Assay performed	direct
activity_definition_id	0..1 ActivityDefinition	Unique identifier for this Activity Definition	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record
access_policy_id	0..1 AccessPolicy	Global identifier for the access policy that applies to this row of data	Record
study_id	0..1 Study	INCLUDE Global ID for the study	Record

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/common-access-model

Mappings

Mapping Type	Mapped Value
self	cam:Assay
native	cam:Assay

LinkML Source

Direct

name: Assay
description: A specific assay that was performed on given subject(s) or sample(s).
title: Assay
from_schema: https://includedcc.org/common-access-model
is_a: Record
slots:
- assay_id
- subject_id
- sample_id
- file_id
- assay_type
- assay_source
- activity_definition_id
slot_usage:
  assay_id:
    name: assay_id
    identifier: true
    range: diGlobalID
    required: true
  file_id:
    name: file_id
    multivalued: true
  subject_id:
    name: subject_id
    multivalued: true
  sample_id:
    name: sample_id
    multivalued: true
  assay_type:
    name: assay_type
    required: true

Induced

name: Assay
description: A specific assay that was performed on given subject(s) or sample(s).
title: Assay
from_schema: https://includedcc.org/common-access-model
is_a: Record
slot_usage:
  assay_id:
    name: assay_id
    identifier: true
    range: diGlobalID
    required: true
  file_id:
    name: file_id
    multivalued: true
  subject_id:
    name: subject_id
    multivalued: true
  sample_id:
    name: sample_id
    multivalued: true
  assay_type:
    name: assay_type
    required: true
attributes:
  assay_id:
    name: assay_id
    description: The unique identifier for the Assay.
    title: Assay ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    identifier: true
    alias: assay_id
    owner: Assay
    domain_of:
    - Assay
    range: diGlobalID
    required: true
  subject_id:
    name: subject_id
    description: INCLUDE Global ID for the Subject
    title: Study ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: subject_id
    owner: Assay
    domain_of:
    - Subject
    - Demographics
    - FamilyRelationship
    - FamilyMember
    - SubjectAssertion
    - Encounter
    - File
    - Assay
    range: Subject
    multivalued: true
  sample_id:
    name: sample_id
    description: The unique identifier for this Sample.
    title: Sample ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: sample_id
    owner: Assay
    domain_of:
    - Sample
    - Aliquot
    - File
    - Assay
    range: Sample
    multivalued: true
  file_id:
    name: file_id
    description: Unique identifier for this File.
    title: File ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: file_id
    owner: Assay
    domain_of:
    - File
    - Assay
    - Dataset
    range: File
    multivalued: true
  assay_type:
    name: assay_type
    description: The type of assay performed.
    title: Assay Type
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: assay_type
    owner: Assay
    domain_of:
    - Assay
    range: EnumAssayType
    required: true
  assay_source:
    name: assay_source
    description: The original description of the Assay performed.
    title: Assay Source Text
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: assay_source
    owner: Assay
    domain_of:
    - Assay
    range: string
  activity_definition_id:
    name: activity_definition_id
    description: Unique identifier for this Activity Definition.
    title: Activity Definition ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: activity_definition_id
    owner: Assay
    domain_of:
    - EncounterDefinition
    - ActivityDefinition
    - Assay
    range: ActivityDefinition
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: external_id
    owner: Assay
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: access_policy_id
    owner: Assay
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    alias: study_id
    owner: Assay
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false