Enum: Read Group Quality Scale (EnumReadGroupQualityScale)

Quality score encoding used in FASTQ files, from the LinkML valuesets SequenceQualityEncoding.

Enumeration Source

Reachable From: - Source: NONE - Nodes: SequenceQualityEncoding - Via: rdfs:subClassOf

Permissible Values

Value	Meaning	Description	Additional Info
ILLUMINA_1:3	ILLUMINA_1:3	Illumina 1	Title: ILLUMINA_1_3
ILLUMINA_1:5	ILLUMINA_1:5	Illumina 1	Title: ILLUMINA_1_5
ILLUMINA_1:8	ILLUMINA_1:8	Illumina 1	Title: ILLUMINA_1_8
SANGER	SANGER	Sanger/Phred+33 (PHRED scores, ASCII offset 33)	Title: SANGER
SOLEXA	SOLEXA	Solexa+64 (Solexa scores, ASCII offset 64)	Title: SOLEXA

Slots

Name	Description
quality_scale	The quality score scale used for this read group

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/common-access-model

LinkML Source

name: EnumReadGroupQualityScale
description: Quality score encoding used in FASTQ files, from the LinkML valuesets
  SequenceQualityEncoding.
title: Read Group Quality Scale
from_schema: https://includedcc.org/common-access-model
rank: 1000
permissible_values:
  ILLUMINA_1:3:
    text: ILLUMINA_1:3
    description: Illumina 1.3+ (PHRED+64, ASCII offset 64)
    meaning: ILLUMINA_1:3
    title: ILLUMINA_1_3
  ILLUMINA_1:5:
    text: ILLUMINA_1:5
    description: Illumina 1.5+ (PHRED+64, special handling for 0-2)
    meaning: ILLUMINA_1:5
    title: ILLUMINA_1_5
  ILLUMINA_1:8:
    text: ILLUMINA_1:8
    description: Illumina 1.8+ (PHRED+33, modern standard)
    meaning: ILLUMINA_1:8
    title: ILLUMINA_1_8
  SANGER:
    text: SANGER
    description: Sanger/Phred+33 (PHRED scores, ASCII offset 33)
    meaning: SANGER
    title: SANGER
  SOLEXA:
    text: SOLEXA
    description: Solexa+64 (Solexa scores, ASCII offset 64)
    meaning: SOLEXA
    title: SOLEXA
reachable_from:
  source_ontology: linkml:valuesets
  source_nodes:
  - SequenceQualityEncoding
  relationship_types:
  - rdfs:subClassOf
  is_direct: false
  include_self: false