Class: Dataset (Dataset)

Set of files grouped together for release.

 classDiagram
    class Dataset
    click Dataset href "../Dataset/"
      Record <|-- Dataset
        click Record href "../Record/"

      Dataset : access_policy_id





        Dataset --> "0..1" AccessPolicy : access_policy_id
        click AccessPolicy href "../AccessPolicy/"



      Dataset : data_collection_end

      Dataset : data_collection_start

      Dataset : dataset_id

      Dataset : description

      Dataset : do_id





        Dataset --> "0..1" DOI : do_id
        click DOI href "../DOI/"



      Dataset : external_id

      Dataset : file_id





        Dataset --> "*" File : file_id
        click File href "../File/"



      Dataset : name

      Dataset : publication





        Dataset --> "*" Publication : publication
        click Publication href "../Publication/"



      Dataset : study_id





        Dataset --> "0..1" Study : study_id
        click Study href "../Study/"

Inheritance

Dataset [ Record]

Slots

Name	Cardinality and Range	Description	Inheritance
dataset_id	1 LsGlobalID	Unique identifier for a Dataset	direct
name	0..1 String	Name of the entity	direct
description	0..1 String	Description for this entity	direct
do_id	0..1 DOI	Digital Object Identifier (DOI) for this Record	direct
file_id	* File	The list of files comprising this dataset	direct
publication	* Publication	Publications associated with this Record	direct
data_collection_start	0..1 String	The date that data collection started	direct
data_collection_end	0..1 String	The date that data collection started	direct
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Record
access_policy_id	0..1 AccessPolicy	Global identifier for the access policy that applies to this row of data	Record
study_id	0..1 Study	INCLUDE Global ID for the study	Record

Identifier and Mapping Information

Schema Source

from schema: https://includedcc.org/common-access-model

Mappings

Mapping Type	Mapped Value
self	cam:Dataset
native	cam:Dataset

Examples

Example: Dataset-001

dataset_id: ls-h7rc1m2nvw
name: M00M00 release 1
do_id: 10.5072/cam-testdata.bc5dx08a
file_id:
- dr-88uhd8kdda
- dr-8racu3r89t
- dr-bpfgefc86h
- dr-mabd0lfbmq
- dr-njl7vp2sz9
publication:
- bibliographic_reference: Quack F, Meow N, Meow E, Meow A. Social behavior in goats is mostly unremarkable. Ann Hayloft Genet. 2017;24(12):283-289.
  external_id:
  - https://example.org/cam-testdata/tiny/Publication/s1-pub1
  access_policy_id: co-ajdm9fyxxz
  study_id: sd-7hwpqzc2yr
external_id:
- https://example.org/cam-testdata/tiny/Dataset/s1-release-1
access_policy_id: co-ajdm9fyxxz
study_id: sd-7hwpqzc2yr

LinkML Source

Direct

name: Dataset
description: Set of files grouped together for release.
title: Dataset
from_schema: https://includedcc.org/common-access-model
mixins:
- Record
slots:
- dataset_id
- name
- description
- do_id
- file_id
- publication
- data_collection_start
- data_collection_end
slot_usage:
  dataset_id:
    name: dataset_id
    identifier: true
    range: lsGlobalID
    required: true
  file_id:
    name: file_id
    description: The list of files comprising this dataset.
    multivalued: true

Induced

name: Dataset
description: Set of files grouped together for release.
title: Dataset
from_schema: https://includedcc.org/common-access-model
mixins:
- Record
slot_usage:
  dataset_id:
    name: dataset_id
    identifier: true
    range: lsGlobalID
    required: true
  file_id:
    name: file_id
    description: The list of files comprising this dataset.
    multivalued: true
attributes:
  dataset_id:
    name: dataset_id
    description: Unique identifier for a Dataset.
    title: Dataset ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    identifier: true
    owner: Dataset
    domain_of:
    - Dataset
    range: lsGlobalID
    required: true
  name:
    name: name
    description: Name of the entity.
    title: Name
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - VirtualBiorepository
    - Investigator
    - Vocabulary
    - EncounterDefinition
    - ActivityDefinition
    - Dataset
    range: string
    required: false
  description:
    name: description
    description: Description for this entity.
    title: Description
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Vocabulary
    - EncounterDefinition
    - ActivityDefinition
    - Dataset
    range: string
  do_id:
    name: do_id
    description: Digital Object Identifier (DOI) for this Record.
    title: DOI
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Study
    - DOI
    - Dataset
    range: DOI
    multivalued: false
  file_id:
    name: file_id
    description: The list of files comprising this dataset.
    title: File ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - File
    - Assay
    - Dataset
    range: File
    multivalued: true
  publication:
    name: publication
    description: Publications associated with this Record.
    title: Publication
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Study
    - Dataset
    range: Publication
    multivalued: true
  data_collection_start:
    name: data_collection_start
    description: The date that data collection started. May include only a year.
    title: Data Collection Start
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Dataset
    range: string
  data_collection_end:
    name: data_collection_end
    description: The date that data collection started. May include only a year.
    title: Data Collection End
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Dataset
    range: string
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems like dbGaP
    title: External Identifiers
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Record
    range: uriorcurie
    required: false
    multivalued: true
  access_policy_id:
    name: access_policy_id
    description: Global identifier for the access policy that applies to this row
      of data.
    title: Access Policy ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Record
    - AccessPolicy
    range: AccessPolicy
  study_id:
    name: study_id
    description: INCLUDE Global ID for the study
    title: Study ID
    from_schema: https://includedcc.org/common-access-model
    rank: 1000
    owner: Dataset
    domain_of:
    - Record
    - StudyMetadata
    range: Study
    multivalued: false